BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0052.p
         (489 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313209|ref|YP_003777301.1| SPFH domain-containing protein ...   978   0.0  

>gi|300313209|ref|YP_003777301.1| SPFH domain-containing protein
           [Herbaspirillum seropedicae SmR1]
          Length = 489

 Score =  978 bits (2527), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/489 (99%), Positives = 489/489 (100%)

Query: 1   MNNLNILELGLIAAAALLLIAIFIIAVTLRRVVPTNMVHIVQTSHSSTPYGRGKPAGNTY 60
           MNNLNILELGLIAAAALLLIAIFIIAVTLRRVVPTNMVHIVQTSHSSTPYGRGKPAGNTY
Sbjct: 1   MNNLNILELGLIAAAALLLIAIFIIAVTLRRVVPTNMVHIVQTSHSSTPYGRGKPAGNTY 60

Query: 61  YAWPSWVPKLGITVTEFPESIFQVALNNYEAYDKERLPFVIDAVAFFRVDNAETAAQRVA 120
           YAWPSWVPKLGITVTEFPESIFQVALNNYEAYDKERLPFVIDAVAFFRVDNAETAAQRVA
Sbjct: 61  YAWPSWVPKLGITVTEFPESIFQVALNNYEAYDKERLPFVIDAVAFFRVDNAETAAQRVA 120

Query: 121 TFDALHTDLKAVLQGAVRRVLATNALEDIMQSRAELGAQFTAEVQEQISQWGVLPVKTIE 180
           TFDALHTDLKAVLQGAVRRVLATNALEDIMQSRAELGAQFTAEVQEQISQWGVLPVKTIE
Sbjct: 121 TFDALHTDLKAVLQGAVRRVLATNALEDIMQSRAELGAQFTAEVQEQISQWGVLPVKTIE 180

Query: 181 FMDLRDANGSNVINNVMAKEKSRIDMESRVKVAENQRQAELAEIDAKRTVEVQRQDAAQQ 240
           FMDLRDANGSNVINNVMAKEKSRIDMESRVKVAENQRQAELAEIDAKRTVEVQRQDAAQQ
Sbjct: 181 FMDLRDANGSNVINNVMAKEKSRIDMESRVKVAENQRQAELAEIDAKRTVEVQRQDAAQQ 240

Query: 241 IGLRTAEKEKQVGIANEQAQQEIKAAAKTTTERDMDVKKVQEVRGAEIARDVAAVRAEQE 300
           IGLRTAEKEKQVGIANEQAQQEIKAAAKTTTERDMDVKKVQEVRGAEIARDVAAVRAEQE
Sbjct: 241 IGLRTAEKEKQVGIANEQAQQEIKAAAKTTTERDMDVKKVQEVRGAEIARDVAAVRAEQE 300

Query: 301 KQVAVVNADAQKQVQVINADAQKQAVTTKAEGDLAAALKEADGIRARGEAAAAAEQAMLM 360
           KQVAVVNADAQKQVQVINADAQKQAVTTKAEGDLAAALKEADGIRARGEAAAAAEQAMLM
Sbjct: 301 KQVAVVNADAQKQVQVINADAQKQAVTTKAEGDLAAALKEADGIRARGEAAAAAEQAMLM 360

Query: 361 APVTTQIQLAKEIGANAGYQQYLITIKQVEVGRDVGLEMARAMQHADLKVIANAGDMQQG 420
           APVTTQIQLAKEIGANAGYQQYLITIKQVEVGRDVGLEMARAMQHADLKVIANAGDMQQG
Sbjct: 361 APVTTQIQLAKEIGANAGYQQYLITIKQVEVGRDVGLEMARAMQHADLKVIANAGDMQQG 420

Query: 421 VASLGDLFTPAGGTKLSGMLAALSQTPEGRQFLDHVTPLLAKGATTGALVGAASGSATAG 480
           VASLGDLFTPAGGTKL+GMLAALSQTPEGRQFLDHVTPLLAKGATTGALVGAASGSATAG
Sbjct: 421 VASLGDLFTPAGGTKLTGMLAALSQTPEGRQFLDHVTPLLAKGATTGALVGAASGSATAG 480

Query: 481 AVAGGAAQK 489
           AVAGGAAQK
Sbjct: 481 AVAGGAAQK 489


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.127    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,077,448
Number of extensions: 38632
Number of successful extensions: 224
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 400
Effective length of database: 1,198,455
Effective search space: 479382000
Effective search space used: 479382000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)