BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0051.p
         (613 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313210|ref|YP_003777302.1| protease with the C-terminal PD...  1225   0.0  

>gi|300313210|ref|YP_003777302.1| protease with the C-terminal PDZ
           domain-containing protein [Herbaspirillum seropedicae
           SmR1]
          Length = 598

 Score = 1225 bits (3169), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/598 (99%), Positives = 593/598 (99%)

Query: 16  MATPIRYRITSLDPASHLFDVSVTVDAPAAEGQVFSLPAWIPGSYMIREFGKNIVQLRGE 75
           MATPIRYRITSLDPASHLFDVSVTVD PAAEGQVFSLPAWIPGSYMIREFGKNIVQLRGE
Sbjct: 1   MATPIRYRITSLDPASHLFDVSVTVDTPAAEGQVFSLPAWIPGSYMIREFGKNIVQLRGE 60

Query: 76  CNGRKVGVKKLDKHTWQAAPCKGALTLHYQVYAWDLSVRTAHLDRTHGFFNGTSVFLCAH 135
           CNGRKVGVKKLDKHTWQAAPCKGALTLHYQVYAWDLSVRTAHLDRTHGFFNGTSVFLCAH
Sbjct: 61  CNGRKVGVKKLDKHTWQAAPCKGALTLHYQVYAWDLSVRTAHLDRTHGFFNGTSVFLCAH 120

Query: 136 GFEQGEHVVELVRPEGEEFKRWRVATAMSELKAKRYGFGTYVAQNYDELIDHPVEIGDFA 195
           GFEQGEHVVELVRPEGEEFKRWRVATAMSELKAKRYGFGTYVAQNYDELIDHPVEIGDFA
Sbjct: 121 GFEQGEHVVELVRPEGEEFKRWRVATAMSELKAKRYGFGTYVAQNYDELIDHPVEIGDFA 180

Query: 196 LATFQAHGVPHDVVITGRVPNLDLARLCEDLKKICEAQIAFFEPRSKRAPMDRYVFMTLA 255
           LATFQAHGVPHDVVITGRVPNLDLARLCEDLKKICEAQIAFFEPRSKRAPMDRYVFMTLA
Sbjct: 181 LATFQAHGVPHDVVITGRVPNLDLARLCEDLKKICEAQIAFFEPRSKRAPMDRYVFMTLA 240

Query: 256 VGDGYGGLEHRASTALICARADLPVKGKPEQTDGYRTYLGLCSHEYFHTWNVKRIKPAVF 315
           VGDGYGGLEHRASTALICARADL VKGKPEQTDGYRTYLGLCSHEYFHTWNVKRIKPAVF
Sbjct: 241 VGDGYGGLEHRASTALICARADLSVKGKPEQTDGYRTYLGLCSHEYFHTWNVKRIKPAVF 300

Query: 316 APYDLRQENYTSLLWLFEGFTSYYDDLFLVRTGVIDTDNYLKLVGKTVTGVLRGTGRKKQ 375
           APYDLRQENYTSLLWLFEGFTSYYDDLFLVRTGVIDTDNYLKLVGKTVTGVLRGTGRKKQ
Sbjct: 301 APYDLRQENYTSLLWLFEGFTSYYDDLFLVRTGVIDTDNYLKLVGKTVTGVLRGTGRKKQ 360

Query: 376 SVAESSFDAWVKYYRQDENASNAIVSYYTKGSLVALGLDLTIRTQTRGRRSLDDVMRGLW 435
           SVAESSFDAWVKYYRQDENASNAIVSYYTKGSLVALGLDLTIRTQTRGRRSLDDVMRGLW
Sbjct: 361 SVAESSFDAWVKYYRQDENASNAIVSYYTKGSLVALGLDLTIRTQTRGRRSLDDVMRGLW 420

Query: 436 TRYGRDFYNGKQQGVPEDEILAIMEELSGADLKRFHDRHIRGTEDVPLEDLLPAFGVAYE 495
            RYGRDFY GKQQGVPEDEILAIMEELSGADLKRFHDRHIRGTEDVP EDLLPAFGVAYE
Sbjct: 421 VRYGRDFYEGKQQGVPEDEILAIMEELSGADLKRFHDRHIRGTEDVPFEDLLPAFGVAYE 480

Query: 496 ANVPADAKPWLGARIGKEGGDAKLAAVYEGGPAMLAGLSAGDKLVAIDGLRVPASGPDGL 555
           ANVPADAKPWLGARIGKEGGDAKLAAVYEGGPAMLAGLSAGDKLVAIDGLRVPASGPDGL
Sbjct: 481 ANVPADAKPWLGARIGKEGGDAKLAAVYEGGPAMLAGLSAGDKLVAIDGLRVPASGPDGL 540

Query: 556 LARYRLNDTVRIHAFRRDELMEFSVRLKADTAPQVSLQALAKPVAAARQRAAWLHEGK 613
           LARYRLNDTVRIHAFRRDELMEFSVRLKADTAPQVSLQALAKPVAAARQRAAWLHEGK
Sbjct: 541 LARYRLNDTVRIHAFRRDELMEFSVRLKADTAPQVSLQALAKPVAAARQRAAWLHEGK 598


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,058,052
Number of extensions: 94672
Number of successful extensions: 228
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 522
Effective length of database: 1,188,985
Effective search space: 620650170
Effective search space used: 620650170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)