BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0050.p
         (480 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313211|ref|YP_003777303.1| glutamate synthase small subuni...   993   0.0  

>gi|300313211|ref|YP_003777303.1| glutamate synthase small subunit
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 487

 Score =  993 bits (2568), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/480 (100%), Positives = 480/480 (100%)

Query: 1   MEYQRLKEASEAPAARTKHYKEFVLHLSDADAKIQGARCMDCGIPFCNNGCPVNNIIPDW 60
           MEYQRLKEASEAPAARTKHYKEFVLHLSDADAKIQGARCMDCGIPFCNNGCPVNNIIPDW
Sbjct: 8   MEYQRLKEASEAPAARTKHYKEFVLHLSDADAKIQGARCMDCGIPFCNNGCPVNNIIPDW 67

Query: 61  NDLVYRGNYKEALDTLHQTNNFPEFTGRICPAPCEAACTLGINNDAVGIKSIEHFIIDKG 120
           NDLVYRGNYKEALDTLHQTNNFPEFTGRICPAPCEAACTLGINNDAVGIKSIEHFIIDKG
Sbjct: 68  NDLVYRGNYKEALDTLHQTNNFPEFTGRICPAPCEAACTLGINNDAVGIKSIEHFIIDKG 127

Query: 121 WENGWVVPQPAAIKTGKKVAVVGSGPAGLAAAQQLARAGHDVTVFEKNDRVGGLLRYGIP 180
           WENGWVVPQPAAIKTGKKVAVVGSGPAGLAAAQQLARAGHDVTVFEKNDRVGGLLRYGIP
Sbjct: 128 WENGWVVPQPAAIKTGKKVAVVGSGPAGLAAAQQLARAGHDVTVFEKNDRVGGLLRYGIP 187

Query: 181 DFKMEKSHIDLRVEQMKAEGVTFRTGVFVGKDFPETVNNWSKETVTPEELKKEFDAVVIA 240
           DFKMEKSHIDLRVEQMKAEGVTFRTGVFVGKDFPETVNNWSKETVTPEELKKEFDAVVIA
Sbjct: 188 DFKMEKSHIDLRVEQMKAEGVTFRTGVFVGKDFPETVNNWSKETVTPEELKKEFDAVVIA 247

Query: 241 GGAESPRDLPVPGRELKGVHFAMDFLPLQNKVNAGDKLKNQIMATGKNVVVIGGGDTGSD 300
           GGAESPRDLPVPGRELKGVHFAMDFLPLQNKVNAGDKLKNQIMATGKNVVVIGGGDTGSD
Sbjct: 248 GGAESPRDLPVPGRELKGVHFAMDFLPLQNKVNAGDKLKNQIMATGKNVVVIGGGDTGSD 307

Query: 301 CVGTSNRHGAASVTQFELMPQPPESENKPLVWPYWPIKLRTSSSHEEGCQRDFAVTTKRL 360
           CVGTSNRHGAASVTQFELMPQPPESENKPLVWPYWPIKLRTSSSHEEGCQRDFAVTTKRL
Sbjct: 308 CVGTSNRHGAASVTQFELMPQPPESENKPLVWPYWPIKLRTSSSHEEGCQRDFAVTTKRL 367

Query: 361 EGKGGKVEKLIAARVEFKDGKMVEVPDSEFEIKADLVLLAMGFVSPVQQVLDAFGVEKDA 420
           EGKGGKVEKLIAARVEFKDGKMVEVPDSEFEIKADLVLLAMGFVSPVQQVLDAFGVEKDA
Sbjct: 368 EGKGGKVEKLIAARVEFKDGKMVEVPDSEFEIKADLVLLAMGFVSPVQQVLDAFGVEKDA 427

Query: 421 RGNAKATTDGEGCYKTSVDKVFAAGDMRRGQSLVVWAIREGRQCARAVDEFLMGSSLLPR 480
           RGNAKATTDGEGCYKTSVDKVFAAGDMRRGQSLVVWAIREGRQCARAVDEFLMGSSLLPR
Sbjct: 428 RGNAKATTDGEGCYKTSVDKVFAAGDMRRGQSLVVWAIREGRQCARAVDEFLMGSSLLPR 487


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,527,356
Number of extensions: 65167
Number of successful extensions: 247
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 391
Effective length of database: 1,198,455
Effective search space: 468595905
Effective search space used: 468595905
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)