BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0042.p
         (501 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313219|ref|YP_003777311.1| AMP nucleosidase [Herbaspirillu...  1035   0.0  

>gi|300313219|ref|YP_003777311.1| AMP nucleosidase [Herbaspirillum
           seropedicae SmR1]
          Length = 502

 Score = 1035 bits (2675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/501 (99%), Positives = 500/501 (99%)

Query: 1   MFATEKFTDPDAAYARVLEIYEHNTAILRDAFRQFSSGQPMDQQRVRACYPFVRITTEKS 60
           MFATEKFTDPDAAYARVLEIYEHNTAILRDAFRQFSSGQPMDQQRVRACYPFVRITTEKS
Sbjct: 2   MFATEKFTDPDAAYARVLEIYEHNTAILRDAFRQFSSGQPMDQQRVRACYPFVRITTEKS 61

Query: 61  THTDTRQSFGFVAGPGCYQTTLTRPKLFHQYLLAQFRLILQNHEVPLEVGVSDMPIPVHF 120
           THTDTRQSFGFVAGPGCYQTTLTRPKLFHQYLLAQFRLILQNHEVPLEVGVSDMPIPVHF
Sbjct: 62  THTDTRQSFGFVAGPGCYQTTLTRPKLFHQYLLAQFRLILQNHEVPLEVGVSDMPIPVHF 121

Query: 121 AFPEGIHVEGSLDPEHLRTLPDHFDLPDLATMDDRIANGTYEVDNGAWREGPHPLALFTG 180
           AFPEGIHVEGSLDPEHLRTLPDHFDLPDLATMDDRIANGTYEVDNGAWREGPHPLALFTG
Sbjct: 122 AFPEGIHVEGSLDPEHLRTLPDHFDLPDLATMDDRIANGTYEVDNGAWREGPHPLALFTG 181

Query: 181 PRIDYSLHRLRHYTATSPDQFQRYVLFTNYAFYVDEFVRLGRRLMEPTDDPDELAYRRQY 240
           PRIDYSLHRLRHYTATSPDQFQRYVLFTNYAFYVDEFVRLGRRLMEPTDDPDELAYRRQY
Sbjct: 182 PRIDYSLHRLRHYTATSPDQFQRYVLFTNYAFYVDEFVRLGRRLMEPTDDPDELAYRRQY 241

Query: 241 TAFVEPGNVTTWSANQEGAEARAASGVAPARQPQMPAYHLQRADGSGITLVNIGVGPSNA 300
           TAFVEPGNVTTWSANQEGAE RAASGVAPARQPQMPAYHLQRADGSGITLVNIGVGPSNA
Sbjct: 242 TAFVEPGNVTTWSANQEGAETRAASGVAPARQPQMPAYHLQRADGSGITLVNIGVGPSNA 301

Query: 301 KTVTDHVAVLRPHGWLMLGHCAGLSASQRMGDYVLAHAYVRDDHVLDDDLPLWVPIPALA 360
           KTVTDHVAVLRPHGWLMLGHCAGLSASQRMGDYVLAHAYVRDDHVLDDDLPLWVPIPALA
Sbjct: 302 KTVTDHVAVLRPHGWLMLGHCAGLSASQRMGDYVLAHAYVRDDHVLDDDLPLWVPIPALA 361

Query: 361 EVQLALQDAVASITRLDGYELKRIMRTGTVASVDDRNWELRDHRTPLLRFSQSRAIALDM 420
           EVQLALQDAVASITRLDGYELKRIMRTGTVASVDDRNWELRDHRTPLLRFSQSRAIALDM
Sbjct: 362 EVQLALQDAVASITRLDGYELKRIMRTGTVASVDDRNWELRDHRTPLLRFSQSRAIALDM 421

Query: 421 ESATVAANGFRFRVPYGTLLCVSDKPLHGEIKLPGMANTFYEQRVAQHLQIGIRALELLR 480
           ESATVAANGFRFRVPYGTLLCVSDKPLHGEIKLPGMANTFYEQRVAQHLQIGIRALELLR
Sbjct: 422 ESATVAANGFRFRVPYGTLLCVSDKPLHGEIKLPGMANTFYEQRVAQHLQIGIRALELLR 481

Query: 481 NNGIEQVHSRKLRSFAEPAFR 501
           NNGIEQVHSRKLRSFAEPAFR
Sbjct: 482 NNGIEQVHSRKLRSFAEPAFR 502


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,710,220
Number of extensions: 76723
Number of successful extensions: 194
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 412
Effective length of database: 1,198,455
Effective search space: 493763460
Effective search space used: 493763460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)