BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0041.p
         (355 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313220|ref|YP_003777312.1| L-asparaginase/archaeal Glu-tRN...   561   e-161
gi|300310776|ref|YP_003774868.1| L-asparaginase/archaeal Glu-tRN...   397   e-112

>gi|300313220|ref|YP_003777312.1| L-asparaginase/archaeal
           Glu-tRNAGln amidotransferase subunit D protein
           [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score =  561 bits (1447), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 275/275 (100%), Positives = 275/275 (100%)

Query: 81  MQIASENMNNDAWLKLGKRVNTLLAQSDVDGIVITHGTDTIEETAYFLDLVVKSKKPVVI 140
           MQIASENMNNDAWLKLGKRVNTLLAQSDVDGIVITHGTDTIEETAYFLDLVVKSKKPVVI
Sbjct: 1   MQIASENMNNDAWLKLGKRVNTLLAQSDVDGIVITHGTDTIEETAYFLDLVVKSKKPVVI 60

Query: 141 VGAMRPSTAISADGPINLYNAVLLAGSKEAIGKGVLVTLNDQINAGREVTKTNTSTLDTF 200
           VGAMRPSTAISADGPINLYNAVLLAGSKEAIGKGVLVTLNDQINAGREVTKTNTSTLDTF
Sbjct: 61  VGAMRPSTAISADGPINLYNAVLLAGSKEAIGKGVLVTLNDQINAGREVTKTNTSTLDTF 120

Query: 201 KTPELGFLGYIQGSKPYFYRQSTRKNTVDTPFDIMNLDKLPQVDIVYGYANMNPIALNAF 260
           KTPELGFLGYIQGSKPYFYRQSTRKNTVDTPFDIMNLDKLPQVDIVYGYANMNPIALNAF
Sbjct: 121 KTPELGFLGYIQGSKPYFYRQSTRKNTVDTPFDIMNLDKLPQVDIVYGYANMNPIALNAF 180

Query: 261 VAAGAQGIIHAGVGDGSLNNTVVPSLTEARKKGVVIVRSSRVGQGIVARNGEADDDKLDF 320
           VAAGAQGIIHAGVGDGSLNNTVVPSLTEARKKGVVIVRSSRVGQGIVARNGEADDDKLDF
Sbjct: 181 VAAGAQGIIHAGVGDGSLNNTVVPSLTEARKKGVVIVRSSRVGQGIVARNGEADDDKLDF 240

Query: 321 VVSDTLNAQKARILLMLALTKTTDTKEIQKMFWEY 355
           VVSDTLNAQKARILLMLALTKTTDTKEIQKMFWEY
Sbjct: 241 VVSDTLNAQKARILLMLALTKTTDTKEIQKMFWEY 275


>gi|300310776|ref|YP_003774868.1| L-asparaginase/archaeal
           Glu-tRNAGln amidotransferase subunit D protein
           [Herbaspirillum seropedicae SmR1]
          Length = 356

 Score =  397 bits (1021), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 207/346 (59%), Positives = 266/346 (76%), Gaps = 2/346 (0%)

Query: 11  LVLLCLVAAAAAQAQNL-PNVVILATGGTIAGTGATTTTTVGYTAAKVGVDALIAAVPEL 69
           +++L L  A +AQAQ+  PNVV++ TGGTIAG GA++  T  Y +A V VD +IAAVPE+
Sbjct: 12  VMILSLACAFSAQAQDKKPNVVVIGTGGTIAGAGASSVNTAAYQSAVVPVDKIIAAVPEI 71

Query: 70  KKVANVRGEQVMQIASENMNNDAWLKLGKRVNTLLAQSDVDGIVITHGTDTIEETAYFLD 129
            K+ANVRGEQ+ QI SE+ N++  +KLGKRV+ LL Q+DVDGIVITHGTDTIEETAYFL+
Sbjct: 72  SKIANVRGEQIFQIGSESFNDERLIKLGKRVSELLKQNDVDGIVITHGTDTIEETAYFLN 131

Query: 130 LVVKSKKPVVIVGAMRPSTAISADGPINLYNAVLLAGSKEAIGKGVLVTLNDQINAGREV 189
           LV+KS KPVV+VG+MRP TA+ ADG +NLY+AVL+AGSKEA GKG LV +ND+I++GR+V
Sbjct: 132 LVLKSDKPVVVVGSMRPGTALGADGALNLYDAVLVAGSKEAAGKGTLVVMNDEIHSGRDV 191

Query: 190 TKTNTSTLDTFKTPELGFLGYIQGSKPYFYRQSTRKNTVDTPFDIMNLDKLPQVDIVYGY 249
           TK+NT  ++TF++P  G LGY+  +K  FYR   R +T  T FDI  +  LP+VDIVY Y
Sbjct: 192 TKSNTFKVETFRSP-YGPLGYVVENKLSFYRLPARPHTTQTEFDIDKISSLPRVDIVYNY 250

Query: 250 ANMNPIALNAFVAAGAQGIIHAGVGDGSLNNTVVPSLTEARKKGVVIVRSSRVGQGIVAR 309
            N++  A +AFVAAGA+ IIH G G+GS+   +VP L E R KGV ++R+SR G G+V R
Sbjct: 251 GNVSRTAYDAFVAAGAKAIIHDGTGNGSVAEQIVPVLQEVRSKGVQVIRASRTGSGVVIR 310

Query: 310 NGEADDDKLDFVVSDTLNAQKARILLMLALTKTTDTKEIQKMFWEY 355
           NGE  DDK D+VV+D  NAQKARIL  LALTKT D KE+QK+ W+Y
Sbjct: 311 NGEQPDDKFDWVVTDDQNAQKARILAELALTKTNDPKELQKIMWKY 356


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 910,128
Number of extensions: 37760
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 2
Length of query: 355
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 269
Effective length of database: 1,212,660
Effective search space: 326205540
Effective search space used: 326205540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)