BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0037.p (205 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313224|ref|YP_003777316.1| [acyl-carrier-protein] phosphod... 395 e-112 gi|300313768|ref|YP_003777860.1| acyl carrier protein phosphodie... 178 3e-46 gi|300311442|ref|YP_003775534.1| acyl-carrier-protein phosphodie... 175 3e-45 gi|300309901|ref|YP_003773993.1| acyl carrier protein phosphodie... 116 1e-27 gi|300312299|ref|YP_003776391.1| acyl carrier protein phosphodie... 69 3e-13 >gi|300313224|ref|YP_003777316.1| [acyl-carrier-protein] phosphodiesterase [Herbaspirillum seropedicae SmR1] Length = 203 Score = 395 bits (1016), Expect = e-112, Method: Compositional matrix adjust. Identities = 201/203 (99%), Positives = 201/203 (99%) Query: 3 MKLLHLDTSILGEHSVSRQLSADIVAHLRSLQPDLEVIYRDLAAAAPRHLSAEHLAAFGG 62 MKLLHLDTSILGEHSVSRQLSADIVAHLRSLQPDLEVIYRDLAAAAPRHLSAEHLAAFGG Sbjct: 1 MKLLHLDTSILGEHSVSRQLSADIVAHLRSLQPDLEVIYRDLAAAAPRHLSAEHLAAFGG 60 Query: 63 AEVDDPALRADLTLGQACLDELLQADLLVIGAPMYNFSLPSQLKAWIDRVAVAGTTFAYT 122 AEVDDPALRADL LGQACLDELLQADLLVIGAPMYNFSLPSQLKAWIDRVAVAGTTFAYT Sbjct: 61 AEVDDPALRADLALGQACLDELLQADLLVIGAPMYNFSLPSQLKAWIDRVAVAGTTFAYT 120 Query: 123 DAGPEGLLKGRRAYIASARGGQYAEGTAEAALDHQERYLRDLLGFLGIVDVSVVRAEGVA 182 DAGPEGLLKGRRAYIAS RGGQYAEGTAEAALDHQERYLRDLLGFLGIVDVSVVRAEGVA Sbjct: 121 DAGPEGLLKGRRAYIASVRGGQYAEGTAEAALDHQERYLRDLLGFLGIVDVSVVRAEGVA 180 Query: 183 MGDAEKAQALAAAAERIAALRMD 205 MGDAEKAQALAAAAERIAALRMD Sbjct: 181 MGDAEKAQALAAAAERIAALRMD 203 >gi|300313768|ref|YP_003777860.1| acyl carrier protein phosphodiesterase [Herbaspirillum seropedicae SmR1] Length = 208 Score = 178 bits (451), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 98/202 (48%), Positives = 127/202 (62%), Gaps = 3/202 (1%) Query: 3 MKLLHLDTSILGEHSVSRQLSADIVAHLRSLQPDLEVIYRDLAAAAPRHLSAEHLAAF-- 60 MK+LHLD+SIL E S SR LSA +V LR L P +V RDLAAA HL A F Sbjct: 1 MKILHLDSSILAEASASRVLSAAVVEELRILHPTAQVSVRDLAAAPIAHLDGPIAAGFRQ 60 Query: 61 GGAEVDDPALRADLTLGQACLDELLQADLLVIGAPMYNFSLPSQLKAWIDRVAVAGTTFA 120 GA P +RA+ L + + + L +D++V+G PMYNFS+PSQLKAW+DRVA G TF Sbjct: 61 PGANHASPEVRAEQALSETLVSQFLNSDVIVLGVPMYNFSIPSQLKAWLDRVAQPGRTFR 120 Query: 121 YTDAGPEGLLKGRRAYIASARGGQYAEGTAEAALDHQERYLRDLLGFLGIVDVSVVRAEG 180 YT+ GP GL + IAS RGG Y+ G A A +DHQE YL+ GFLGI V VRAE Sbjct: 121 YTENGPLGLSGEKAVIIASTRGGMYSSGPA-AVMDHQEAYLKAFFGFLGIERVRFVRAER 179 Query: 181 VAMGDAEKAQALAAAAERIAAL 202 + G ++Q++ AA + + ++ Sbjct: 180 LIKGAELRSQSMRAALDEVPSV 201 >gi|300311442|ref|YP_003775534.1| acyl-carrier-protein phosphodiesterase [Herbaspirillum seropedicae SmR1] Length = 202 Score = 175 bits (443), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 97/198 (48%), Positives = 129/198 (65%), Gaps = 2/198 (1%) Query: 5 LLHLDTSILGEHSVSRQLSADIVAHLRSLQPDLEVIYRDLAAAAPRHLSAEHLAAFGGAE 64 LLH+D+S S+SRQL+A V+ ++ P +V++RDLAA A HLS L A+ Sbjct: 4 LLHIDSSARSGGSISRQLTASFVSQWQAKNPGGKVVHRDLAANALPHLSESMLGAYFTPA 63 Query: 65 VDDPALRAD-LTLGQACLDELLQADLLVIGAPMYNFSLPSQLKAWIDRVAVAGTTFAYTD 123 A +A+ + A +DELL AD +VIG PMYNF+ PS LKAWID V AG TF YT+ Sbjct: 64 DARSAEQAEVIKQSDALVDELLAADTIVIGVPMYNFAPPSTLKAWIDHVFRAGRTFKYTE 123 Query: 124 AGPEGLLKGRRAYIASARGGQYAEGTAEAALDHQERYLRDLLGFLGIVDVSVVRAEGVAM 183 GP GL+ G++A I +RGG Y+EG E ALD Q +YL+ LGF+GI DV +V AEGV+M Sbjct: 124 TGPVGLVTGKKAVIILSRGGMYSEGPME-ALDFQGKYLKSALGFIGITDVELVVAEGVSM 182 Query: 184 GDAEKAQALAAAAERIAA 201 G+ QA+A+A +I A Sbjct: 183 GEEAAKQAVASAEAKINA 200 >gi|300309901|ref|YP_003773993.1| acyl carrier protein phosphodiesterase [Herbaspirillum seropedicae SmR1] Length = 205 Score = 116 bits (290), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/192 (40%), Positives = 107/192 (55%), Gaps = 7/192 (3%) Query: 1 MTMKLLHLDTSILGEHSVSRQLSADIVAHLR-SLQPDLEVIYRDLAAAAPRHLSAEHLAA 59 MT LL + +S G S+S + + +I ++ S L+V RDL A H+++ ++ Sbjct: 1 MTHVLL-ITSSPRGADSLSSRFATEIAEGIKASSAGTLKV--RDLIADPLPHITSAYIQG 57 Query: 60 -FGGAEVDDPALRADLTLGQACLDELLQADLLVIGAPMYNFSLPSQLKAWIDRVAVAGTT 118 E P A + L Q +DEL AD++VIG+ M NF SQLKAW D V T Sbjct: 58 RLTAPENRTPDQVAAVALAQELVDELKAADIVVIGSGMINFGPSSQLKAWFDHVTWPSVT 117 Query: 119 FAYTDAGPEGLLKGRRAYIASARGGQYAEGTAEAALDHQERYLRDLLGFLGIVDVSVVRA 178 FAY D GP+GLL G++ Y+ +A GG ++EG AA D Q YL LL F+G+ DV +V Sbjct: 118 FAYDDNGPKGLLTGKKTYLVAAAGGVFSEGI-WAAFDFQSNYLLHLLSFIGLSDVEMVCV 176 Query: 179 EGVAMG-DAEKA 189 EG G DA KA Sbjct: 177 EGTVFGPDAAKA 188 >gi|300312299|ref|YP_003776391.1| acyl carrier protein phosphodiesterase [Herbaspirillum seropedicae SmR1] Length = 208 Score = 68.9 bits (167), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 85/178 (47%), Gaps = 7/178 (3%) Query: 3 MKLLHLDTSILGEHSVSRQLSADIVAHL---RSLQPD-LEVIYRDLAAAAPRHLSAEHLA 58 MK+LH+++S G S S QL+ + L ++++ D ++ +L A + A+ +A Sbjct: 1 MKILHINSSSRGADSRSLQLTEVFLRELEKHKAIEVDRFDLFSGELPAFGELAVGAK-MA 59 Query: 59 AFGGAEVDDPALRADLTLGQACLDELLQADLLVIGAPMYNFSLPSQLKAWIDRVAVAGTT 118 F GAE A ++ +A D AD VI P++N LP LK +ID V G Sbjct: 60 MFTGAEATSEQKHAWASI-KAVFDRFASADAYVINVPLWNNGLPYVLKQFIDVVTQPGWA 118 Query: 119 FAYT-DAGPEGLLKGRRAYIASARGGQYAEGTAEAALDHQERYLRDLLGFLGIVDVSV 175 F + + G GLLK R+A I A G + D YL D L F+GI + + Sbjct: 119 FGFDLENGYSGLLKNRKACIIHASGVYHPGIPTNFGSDFSTPYLTDWLKFVGIEEADI 176 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.134 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 620,668 Number of extensions: 26947 Number of successful extensions: 95 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 89 Number of HSP's successfully gapped: 5 Length of query: 205 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 124 Effective length of database: 1,236,335 Effective search space: 153305540 Effective search space used: 153305540 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)