BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0033.p
         (105 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312823|ref|YP_003776915.1| exporter of the RND superfamily...   209   3e-56
gi|300313226|ref|YP_003777318.1| protein exporter of the Resista...   176   3e-46

>gi|300312823|ref|YP_003776915.1| exporter of the RND superfamily
           protein [Herbaspirillum seropedicae SmR1]
          Length = 789

 Score =  209 bits (533), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 104/105 (99%), Positives = 104/105 (99%)

Query: 1   VDYAFYIYNRLQLHLAAGLAIEEALHNAIQEVGIATIFTAITLAIGVATWSFSHLKFQAD 60
           VDYAFYIYNRLQLHLAAGLAIEEALHNAIQEVGIATIFTAITLAIGVATWSFS LKFQAD
Sbjct: 685 VDYAFYIYNRLQLHLAAGLAIEEALHNAIQEVGIATIFTAITLAIGVATWSFSDLKFQAD 744

Query: 61  MGKLLAFMFLVNLIMAMTALPAFAVVLDKMFPRKSPIKLNSALAH 105
           MGKLLAFMFLVNLIMAMTALPAFAVVLDKMFPRKSPIKLNSALAH
Sbjct: 745 MGKLLAFMFLVNLIMAMTALPAFAVVLDKMFPRKSPIKLNSALAH 789


>gi|300313226|ref|YP_003777318.1| protein exporter of the
           Resistance-Nodulation-Cell Division (RND) superfamily
           protein [Herbaspirillum seropedicae SmR1]
          Length = 755

 Score =  176 bits (446), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 85/105 (80%), Positives = 95/105 (90%)

Query: 1   VDYAFYIYNRLQLHLAAGLAIEEALHNAIQEVGIATIFTAITLAIGVATWSFSHLKFQAD 60
           VDYAFYIY+RLQ+HLAAG AI  AL  +IQE+G+ATIFTAITLAIGVATWSFS LKFQAD
Sbjct: 651 VDYAFYIYSRLQMHLAAGEAIAVALEKSIQEIGVATIFTAITLAIGVATWSFSQLKFQAD 710

Query: 61  MGKLLAFMFLVNLIMAMTALPAFAVVLDKMFPRKSPIKLNSALAH 105
           MGKLLAFMF+VNLIMAMTALPAFAVVL++MFPRK  IK+NS + H
Sbjct: 711 MGKLLAFMFIVNLIMAMTALPAFAVVLERMFPRKGKIKVNSMMNH 755


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 253,916
Number of extensions: 7051
Number of successful extensions: 32
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 2
Length of query: 105
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 33
Effective length of database: 1,278,950
Effective search space: 42205350
Effective search space used: 42205350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 123 (52.0 bits)