BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0032.p
         (336 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313225|ref|YP_003777317.1| oxidoreductase [Herbaspirillum ...   637   0.0  
gi|300312824|ref|YP_003776916.1| plant photosystem II stability/...   318   3e-88

>gi|300313225|ref|YP_003777317.1| oxidoreductase [Herbaspirillum
           seropedicae SmR1]
          Length = 327

 Score =  637 bits (1643), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/327 (98%), Positives = 324/327 (99%)

Query: 10  MNVWKTLLGLALAGCSALAAAQGMEPVPVRAAVVDRFADRAMMLDAALAGERVVAVGARG 69
           MNVWKTLL LALAGCS LAAAQGMEPVPVRAAV DRFADRAMMLDAALAGERVVAVGARG
Sbjct: 1   MNVWKTLLWLALAGCSTLAAAQGMEPVPVRAAVADRFADRAMMLDAALAGERVVAVGARG 60

Query: 70  EVILSDDGGRQWRQARQVPVDFTLTAVSFVDDKEGWAVGHGGVVIHTADGGETWQLQRSA 129
           EVILSDDGGRQWRQARQVPVDFTLTAVSFVDDKEGWAVGHGGVVIHTADGGETWQLQRSA
Sbjct: 61  EVILSDDGGRQWRQARQVPVDFTLTAVSFVDDKEGWAVGHGGVVIHTADGGETWQLQRSA 120

Query: 130 TDVDQPLFTVYFRDRQHGWAAGLWSLLLQTEDGGKTWTTLHLPVAAGSKRSDLNLLRFFP 189
           TDVDQPLFTVYFRDR+HGWAAGLWSLLLQTEDGGKTWTTLHLPVAAGSKRSDLNLLRFFP
Sbjct: 121 TDVDQPLFTVYFRDREHGWAAGLWSLLLQTEDGGKTWTTLHLPVAAGSKRSDLNLLRFFP 180

Query: 190 GSGDTLYLAAEQGTLFRSTDAGQHWDILATGSKASLWSGAVAQPAGALIVAGLGGKLLRS 249
           GSGDTLYLAAEQGTLFRSTDAGQHWDILATGSKASLWSGAVAQPAGALIVAGLGGKLLRS
Sbjct: 181 GSGDTLYLAAEQGTLFRSTDAGQHWDILATGSKASLWSGAVAQPAGALIVAGLGGKLLRS 240

Query: 250 TDGGSQWQTVALPTSGSITRVQATPGLLTAASLEGKILQSRDEGVSWQVLWSAPQGLTTI 309
           TDGGSQWQTVALPTSGSITRVQATPGLLTAASLEGKILQSRDEGVSWQVLWSAPQGLTTI
Sbjct: 241 TDGGSQWQTVALPTSGSITRVQATPGLLTAASLEGKILQSRDEGVSWQVLWSAPQGLTTI 300

Query: 310 LVNRLGQVLPFSKEGVLKPVEGVAAKP 336
           LVNRLGQVLPFSKEGVLKPVEGVAAKP
Sbjct: 301 LVNRLGQVLPFSKEGVLKPVEGVAAKP 327


>gi|300312824|ref|YP_003776916.1| plant photosystem II
           stability/assembly factor protein [Herbaspirillum
           seropedicae SmR1]
          Length = 331

 Score =  318 bits (816), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 165/287 (57%), Positives = 206/287 (71%), Gaps = 3/287 (1%)

Query: 43  VDRFADRAMMLDAALAGERVVAVGARGEVILSDDGGRQWRQARQVPVDFTLTAVSFVDDK 102
            D  A   MML AA AG R+VAVGA G +ILSDDGG  +RQA QVPVD TLT+VSF D  
Sbjct: 39  TDAHALHNMMLGAARAGSRIVAVGAYGYIILSDDGGASYRQADQVPVDTTLTSVSFADAS 98

Query: 103 EGWAVGHGGVVIHTADGGETWQLQRSATDVDQPLFTVYFRDRQHGWAAGLWSLLLQTEDG 162
           +GWA GHGGV++HTADGG+TW LQRS T VDQPLF+++F +   GWAAGLWSLLL T+DG
Sbjct: 99  QGWAAGHGGVILHTADGGKTWALQRSDTSVDQPLFSIWFANANEGWAAGLWSLLLHTQDG 158

Query: 163 GKTWTTLHLPVAAGSKRSDLNLLRFFPGSGDTLYLAAEQGTLFRSTDAGQHWDILATGSK 222
           GK+W  + LP A G +R+DLNLL  FPG    L++AAEQG L+RS D GQHW+ LATG+K
Sbjct: 159 GKSWQQVKLPAAPGQQRADLNLLHIFPGRDGALFVAAEQGVLYRSRDGGQHWEALATGTK 218

Query: 223 ASLWSGAVAQPAGALIVAGLGGKLLRSTDGGSQWQTVALPTSGSITRVQATPGLLTAASL 282
           ASLWSG V+  +GA++V GLGGKLLRS DGG  WQ +A PTSGSIT +++    + A+SL
Sbjct: 219 ASLWSG-VSTASGAIVVGGLGGKLLRSDDGGQHWQVIASPTSGSITALRSEGNQVMASSL 277

Query: 283 EGKILQSRDEGVSWQVLWSAPQGLTTILVN--RLGQVLPFSKEGVLK 327
            G +L S D+G  W++  +A   LTT+ +   R  + L + K G  K
Sbjct: 278 SGALLASDDDGRQWRIKATARDALTTLELQEGRAERPLAYGKGGQAK 324


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,117,109
Number of extensions: 50359
Number of successful extensions: 194
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 2
Length of query: 336
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 250
Effective length of database: 1,212,660
Effective search space: 303165000
Effective search space used: 303165000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)