BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0029.p (581 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313227|ref|YP_003777319.1| hypothetical protein Hsero_3940... 1186 0.0 gi|300312822|ref|YP_003776914.1| hypothetical protein Hsero_3527... 778 0.0 >gi|300313227|ref|YP_003777319.1| hypothetical protein Hsero_3940 [Herbaspirillum seropedicae SmR1] Length = 581 Score = 1186 bits (3069), Expect = 0.0, Method: Compositional matrix adjust. Identities = 581/581 (100%), Positives = 581/581 (100%) Query: 1 MKMQLRKKLRRTGSALPRMLPVVLPLMGACLYSGNAQAFTFETESVSGNFDSTVTLGVGI 60 MKMQLRKKLRRTGSALPRMLPVVLPLMGACLYSGNAQAFTFETESVSGNFDSTVTLGVGI Sbjct: 1 MKMQLRKKLRRTGSALPRMLPVVLPLMGACLYSGNAQAFTFETESVSGNFDSTVTLGVGI 60 Query: 61 RAAKPGCSSIIGTVNGGQPSGPTGAGAPAGCADSLSQYNDQGNLNYDRGSAFTTYLKGTH 120 RAAKPGCSSIIGTVNGGQPSGPTGAGAPAGCADSLSQYNDQGNLNYDRGSAFTTYLKGTH Sbjct: 61 RAAKPGCSSIIGTVNGGQPSGPTGAGAPAGCADSLSQYNDQGNLNYDRGSAFTTYLKGTH 120 Query: 121 ELMLKLPDDFKFLGRVSWMRDFAAATSTTGYVSGGGGSTFPGNASGQVSNKTRLLDLWVS 180 ELMLKLPDDFKFLGRVSWMRDFAAATSTTGYVSGGGGSTFPGNASGQVSNKTRLLDLWVS Sbjct: 121 ELMLKLPDDFKFLGRVSWMRDFAAATSTTGYVSGGGGSTFPGNASGQVSNKTRLLDLWVS 180 Query: 181 KEFSIGDQRARLRVGNQVVNWGESLFIPGGINQTNALDLMRLSQPGTQMKEAVLPAPMVN 240 KEFSIGDQRARLRVGNQVVNWGESLFIPGGINQTNALDLMRLSQPGTQMKEAVLPAPMVN Sbjct: 181 KEFSIGDQRARLRVGNQVVNWGESLFIPGGINQTNALDLMRLSQPGTQMKEAVLPAPMVN 240 Query: 241 FATGLGKGFSIETYLQQGWQRNYFPPVGSYWSIGTIGNGAPELGVPTTSTPRSSGQYGVA 300 FATGLGKGFSIETYLQQGWQRNYFPPVGSYWSIGTIGNGAPELGVPTTSTPRSSGQYGVA Sbjct: 241 FATGLGKGFSIETYLQQGWQRNYFPPVGSYWSIGTIGNGAPELGVPTTSTPRSSGQYGVA 300 Query: 301 LRYSPKDSEMNFGLYLMNYHDKSPVMSTSTSSLSGFGYSYLQDRKMIGASMNFPVGNWAV 360 LRYSPKDSEMNFGLYLMNYHDKSPVMSTSTSSLSGFGYSYLQDRKMIGASMNFPVGNWAV Sbjct: 301 LRYSPKDSEMNFGLYLMNYHDKSPVMSTSTSSLSGFGYSYLQDRKMIGASMNFPVGNWAV 360 Query: 361 GTELSYRPKDPITLNTSTAGNSPTTNGTGCLANGNCYVETAKYQLAVTGLLSMTPSDNPT 420 GTELSYRPKDPITLNTSTAGNSPTTNGTGCLANGNCYVETAKYQLAVTGLLSMTPSDNPT Sbjct: 361 GTELSYRPKDPITLNTSTAGNSPTTNGTGCLANGNCYVETAKYQLAVTGLLSMTPSDNPT 420 Query: 421 ILKALGGADTATLMAEAVGIYYPNMKSAYQGIPVAAGNWGWGYDTSANARATGAGTPPSV 480 ILKALGGADTATLMAEAVGIYYPNMKSAYQGIPVAAGNWGWGYDTSANARATGAGTPPSV Sbjct: 421 ILKALGGADTATLMAEAVGIYYPNMKSAYQGIPVAAGNWGWGYDTSANARATGAGTPPSV 480 Query: 481 GTALSYGYNLDFSWVYDGSLIPGWQVVPEIFYFQALHGRTPNFAGTFMQGAKSANFIVSF 540 GTALSYGYNLDFSWVYDGSLIPGWQVVPEIFYFQALHGRTPNFAGTFMQGAKSANFIVSF Sbjct: 481 GTALSYGYNLDFSWVYDGSLIPGWQVVPEIFYFQALHGRTPNFAGTFMQGAKSANFIVSF 540 Query: 541 IQNPAKWQFSLNYAMFWGGDTIFDQPLRGRNFVGATATYNF 581 IQNPAKWQFSLNYAMFWGGDTIFDQPLRGRNFVGATATYNF Sbjct: 541 IQNPAKWQFSLNYAMFWGGDTIFDQPLRGRNFVGATATYNF 581 >gi|300312822|ref|YP_003776914.1| hypothetical protein Hsero_3527 [Herbaspirillum seropedicae SmR1] Length = 563 Score = 778 bits (2009), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/563 (66%), Positives = 456/563 (80%), Gaps = 12/563 (2%) Query: 23 VLPLMGACLYSGNAQAFTFETESVSGNFDSTVTLGVGIRAAKPGCSSIIGTVNGGQPSGP 82 ++ L A L SG AQA TFE E+VSGNFDSTV+ GVG+RA+K C +IG+ + G +G Sbjct: 9 IIALAAATLCSGGAQAMTFEGETVSGNFDSTVSFGVGVRASKQACGLVIGS-SAGNAAGA 67 Query: 83 TGAGAPAGCADSLSQYNDQGNLNYDRGSAFTTYLKGTHELMLKLPDDFKFLGRVSWMRDF 142 +G AP GCAD+LS NDQG+LNY+RG FTTYLKGTHEL+L +P+D KFLGRVSW+RD+ Sbjct: 68 SGPSAPGGCADALSSLNDQGDLNYNRGDRFTTYLKGTHELLLNMPEDVKFLGRVSWLRDY 127 Query: 143 AAATSTTGYVSGGG--GSTFPGNASGQVSNKTRLLDLWVSKEFSIGDQRARLRVGNQVVN 200 +A T TG +SGG G + +A+ ++ +K RLLDLWVSK F +G++RAR+RVGNQVVN Sbjct: 128 SA-TRNTGNISGGNPTGRSLSDDATNELHSKVRLLDLWVSKSFDLGEERARIRVGNQVVN 186 Query: 201 WGESLFIPGGINQTNALDLMRLSQPGTQMKEAVLPAPMVNFATGLGKGFSIETYLQQGWQ 260 WGESLFI GGINQTNA+D+MRLS PGTQ+KEA+LPAPMVNFATGLG+GFS+ETY+QQGW+ Sbjct: 187 WGESLFIAGGINQTNAIDIMRLSNPGTQLKEAILPAPMVNFATGLGRGFSVETYVQQGWE 246 Query: 261 RNYFPPVGSYWSIGTIGNGAPELGVPTTSTPRSSGQYGVALRYSPKDSEMNFGLYLMNYH 320 NYFPPVGSYWS T+G GA LGVP TS PRS+GQYGVALRY+P +++NFGLY+MNYH Sbjct: 247 SNYFPPVGSYWSTATVGIGAEALGVPVTSRPRSTGQYGVALRYTPPGADVNFGLYVMNYH 306 Query: 321 DKSPVMSTSTSSLSGFGYSYLQDRKMIGASMNFPVGNWAVGTELSYRPKDPITLNTSTAG 380 DKSPV+ST+ + SG GYSYL+DRKM+G S NFP+GNWA+GTELSYRPKDP++LN G Sbjct: 307 DKSPVLSTANTP-SGLGYSYLEDRKMVGLSANFPLGNWAIGTELSYRPKDPVSLN----G 361 Query: 381 NSPTTNGTGCLANGNCYVETAKYQLAVTGLLSMTPSDNPTILKALGGADTATLMAEAVGI 440 + P NG C+ NG CYVE KYQLAVTGLLS++PS++ ++LKAL GADTATLM EAV I Sbjct: 362 SVPNANGGFCMVNGKCYVEAEKYQLAVTGLLSLSPSEHGSVLKAL-GADTATLMVEAVAI 420 Query: 441 YYPNMKSAYQGIPVAAGNWGWGYDTSANARATGA--GTPPSVGTALSYGYNLDFSWVYDG 498 YPN+KS+Y GIPVAAG WGWGYDT+ANA T A G VG++ SYGYN DFSWVYDG Sbjct: 421 KYPNLKSSYGGIPVAAGLWGWGYDTTANANRTLANGGNTAGVGSSTSYGYNFDFSWVYDG 480 Query: 499 SLIPGWQVVPEIFYFQALHGRTPNFAGTFMQGAKSANFIVSFIQNPAKWQFSLNYAMFWG 558 S+IPGWQV+PE+++F A+ GRTPN TFM+GAK ANF V+F+QNPAKWQ +LN+A FWG Sbjct: 481 SVIPGWQVIPEVYFFHAVKGRTPNATATFMEGAKMANFTVTFMQNPAKWQVALNFAKFWG 540 Query: 559 GDTIFDQPLRGRNFVGATATYNF 581 G ++FDQPLR R+F G T + NF Sbjct: 541 GASVFDQPLRDRSFYGMTVSRNF 563 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.134 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,701,628 Number of extensions: 69673 Number of successful extensions: 204 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 198 Number of HSP's successfully gapped: 2 Length of query: 581 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 491 Effective length of database: 1,193,720 Effective search space: 586116520 Effective search space used: 586116520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)