BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0026.p (522 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313230|ref|YP_003777322.1| methyl-accepting chemotaxis I (... 1013 0.0 gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis pro... 337 1e-93 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 330 1e-91 gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 315 4e-87 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 311 1e-85 >gi|300313230|ref|YP_003777322.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 535 Score = 1013 bits (2620), Expect = 0.0, Method: Compositional matrix adjust. Identities = 519/522 (99%), Positives = 520/522 (99%) Query: 1 LRLAFCLLLLMLIGMAVFSYDRMSRINTQVDQLGRINVPAMESVSGIRIGMAQYRMGVTL 60 LRLAFCLLLLMLIGMAVFSYDRMSRINTQVDQLGRINVPAMESVSGIRIGMAQYRMGVTL Sbjct: 14 LRLAFCLLLLMLIGMAVFSYDRMSRINTQVDQLGRINVPAMESVSGIRIGMAQYRMGVTL 73 Query: 61 SLLPDDGSGGKAAEEARRDGLAYAEKYLQILVDFASNDDERATSRQLVASWKAYRELAGK 120 SLLPDDGSGGKAAEEARRDGLAYAEKYLQILVDFASNDDERATSRQLVASWKAYRELAGK Sbjct: 74 SLLPDDGSGGKAAEEARRDGLAYAEKYLQILVDFASNDDERATSRQLVASWKAYRELAGK 133 Query: 121 AVALAQAGQSSEALMLAADSAQPYEQMASILKFISDSVSQESAASVVDGEQAYRSAWRAL 180 AVALAQAGQSSEALMLAADSAQPYEQMASILKFISDSVSQESAASVVDGEQAYRSAWRAL Sbjct: 134 AVALAQAGQSSEALMLAADSAQPYEQMASILKFISDSVSQESAASVVDGEQAYRSAWRAL 193 Query: 181 LAVSVAALLCTLGLARLLIRGIATPLQRAVEAANRIAEGALDQDIVVHGRDEIAQLLSAM 240 LAVSVAALLCTLGLARLLIRGIATPL+RAVEAANRIAEGALDQDIVVHGRDEIAQLLSAM Sbjct: 194 LAVSVAALLCTLGLARLLIRGIATPLRRAVEAANRIAEGALDQDIVVHGRDEIAQLLSAM 253 Query: 241 QRMQHALVGIVAGVRREAEHVATASVEIASGNADLSTRTEAQAAALEETAATMNELNATV 300 QRMQHALVGIVAGVRREAEHVATASVEIASGNADLSTRTEAQAAALEETAATMNELNATV Sbjct: 254 QRMQHALVGIVAGVRREAEHVATASVEIASGNADLSTRTEAQAAALEETAATMNELNATV 313 Query: 301 QKNADDAREASSTAQQASAVALQGGQVVQQVVQTMRGIEDSSQRISEIVGTIDGIAFQTN 360 QKNADDAREASSTAQQASAVALQGGQVVQQVVQTMRGIEDSSQRISEIVGTIDGIAFQTN Sbjct: 314 QKNADDAREASSTAQQASAVALQGGQVVQQVVQTMRGIEDSSQRISEIVGTIDGIAFQTN 373 Query: 361 ILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSSLAARETKTLIHESVARIQTGARLVD 420 ILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSSLAARETKTLIHESVARIQ GARLVD Sbjct: 374 ILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSSLAARETKTLIHESVARIQAGARLVD 433 Query: 421 QAGQTMEEIVAAVRSVSAIVAQISQASLAQSGDIAEVEGAIRQLDDALQQNAALVEQSAA 480 QAGQTMEEIVAAVRSVSAIVAQISQASLAQSGDIAEVEGAIRQLDDALQQNAALVEQSAA Sbjct: 434 QAGQTMEEIVAAVRSVSAIVAQISQASLAQSGDIAEVEGAIRQLDDALQQNAALVEQSAA 493 Query: 481 ASESLRQQAGNLLGTVSVFRIAAGPVPETLPAVAPGLPLLAQ 522 ASESLRQQAGNLLGTVSVFRIAAGPVPETLPAVA GLPLLAQ Sbjct: 494 ASESLRQQAGNLLGTVSVFRIAAGPVPETLPAVASGLPLLAQ 535 >gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 337 bits (865), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 229/533 (42%), Positives = 330/533 (61%), Gaps = 11/533 (2%) Query: 1 LRLAFCLLLLMLIGMAVFSYDRMSRINTQVDQLGRINVPAMESVSGIRIGMAQYRMGVTL 60 L AF ++L+ +IG+ FS ++ +N + R +P+++++S + + +A+ R Sbjct: 13 LNAAFLVVLVFIIGLGGFSSLELAAVNKSSTDIARNWLPSIDALSKMSLALARSRSFDMQ 72 Query: 61 SLLPDDGSGGKAAEEARRDGLAYAEKYLQILVDFASNDDERATSRQLVASWKAYRELAGK 120 LL D KA+ E +A K + S E+ ++ + Y+E + Sbjct: 73 QLLTADKQEEKASRERADKQMATLLKEVARYGKLVSEPREKELYPEIERNIALYKEAHER 132 Query: 121 AVALAQAGQSSEALMLAADSAQP-YEQMASILKFISDSVSQESAASVVDGEQAYRSAWRA 179 AL + Q A L ++ P Y ++ + +S+ S+ +A S D + Y A A Sbjct: 133 MSALFEQDQKQAAHALMNSTSTPVYRKLQEQIGELSEVNSKGAALSDADADHIYGQANMA 192 Query: 180 LLAVSVAALLCTLGLARLLIRGIATPLQRAVEAANRIAEGALDQDIVVHGRDEIAQLLSA 239 +LA+ ++ + L+ + R +A PL AV+ A ++A G L DI RDE QLL A Sbjct: 193 ILALVTTCVVLAMALSWWIARLVARPLANAVDIARQVAAGDLTADIPTAHRDETGQLLEA 252 Query: 240 MQRMQHALVGIVAGVRREAEHVATASVEIASGNADLSTRTEAQAAALEETAATMNELNAT 299 +++M L+ IV VR+ + + TAS EIA+GN DLS+RTE QA ALEETA+ M EL +T Sbjct: 253 LRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGALEETASAMEELTST 312 Query: 300 VQKNADDAREASSTAQQASAVALQGGQVVQQVVQTMRGIEDSSQRISEIVGTIDGIAFQT 359 V++N+D+AR+A+ A AS VA GG VV +VV TM I DSS++I +I+G IDGIAFQT Sbjct: 313 VRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKIVDIIGVIDGIAFQT 372 Query: 360 NILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSSLAARETKTLIHESVARIQTGARLV 419 NILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRS+ AA E K LI +SVA++ TG++LV Sbjct: 373 NILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALIDDSVAKVDTGSKLV 432 Query: 420 DQAGQTMEEIVAAVRSVSAIVAQISQASLAQSGDIAEVEGAIRQLDDALQQNAALVEQSA 479 D+AGQTM E+VA+V+ VS IVA+I+ A Q+ I ++ A+ Q+D+ QQNAALVEQ+A Sbjct: 433 DEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMDENTQQNAALVEQAA 492 Query: 480 AASESLRQQAGNLLGTVSVFRIAAGPVPETL--------PA--VAPGLPLLAQ 522 AA+++L++QAG L TVSVFR+ A VP + P + P P LAQ Sbjct: 493 AAAKALQEQAGRLSETVSVFRLDAQHVPVVVSRAAATAQPERDITPARPALAQ 545 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 330 bits (847), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 238/536 (44%), Positives = 329/536 (61%), Gaps = 41/536 (7%) Query: 1 LRLA--FCLLLLMLIGMAVFSYDRMSRINTQVDQLGRINVPAMESVSGIRIGMAQ---YR 55 +RLA F ++ +L ++V ++ +++ IN +DQ+ + +R G+ + Y Sbjct: 12 VRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGVNEQIKYL 71 Query: 56 MGVTLSLLPDDGSGGKAAEEARRDGLAYAEKYLQILVDFASNDDERATSRQLVA----SW 111 G+ + + + A E R L A K + +D + T+RQ+ A Sbjct: 72 RGIAIDI------ENRPANEKRFAQLEVAVKQTKEALD-------KITARQVTAVGQKKA 118 Query: 112 KAYREL-----AGKA--VALAQAGQSSEA----LMLAADSAQPYEQMASILKFISDSVSQ 160 KA E A KA +AL +AG S+ A L D+ Y +A D+ Q Sbjct: 119 KALDEARIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQ 178 Query: 161 -ESAASVVDGEQAYRSAWRALLAVSVAALLCTLGLARLLIRGIATPLQRAVEAANRIAEG 219 E A +V DG A LA S+AA+L + L L+ R I PL AV A +A G Sbjct: 179 AEGAKAVADGAMAIE----VTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAG 234 Query: 220 ALDQDIVVHGRDEIAQLLSAMQRMQHALVGIVAGVRREAEHVATASVEIASGNADLSTRT 279 L I H RDE QL+ A+++M L+ IV+GVRR E + TAS EIASGN DLS RT Sbjct: 235 DLTTRIEPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSART 294 Query: 280 EAQAAALEETAATMNELNATVQKNADDAREASSTAQQASAVALQGGQVVQQVVQTMRGIE 339 E QA +LEETA+ M E+ +TV++NAD+AR+A+ A AS +ALQGGQ+V +VV TM I Sbjct: 295 EQQAGSLEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEIN 354 Query: 340 DSSQRISEIVGTIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSSLAAR 399 SS++I +I+G IDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRS+ AA+ Sbjct: 355 QSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAK 414 Query: 400 ETKTLIHESVARIQTGARLVDQAGQTMEEIVAAVRSVSAIVAQISQASLAQSGDIAEVEG 459 E K LI +SV +++ G+ LV QAG TME++V++VRSV+ IVA+IS AS QS I E+ Sbjct: 415 EIKALIADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINR 474 Query: 460 AIRQLDDALQQNAALVEQSAAASESLRQQAGNLLGTVSVFRIAAGPVPETLPAVAP 515 A+ Q+D+ QQNAALVEQ+AAA++S+++QA L ++S+F++ G ++PA AP Sbjct: 475 AVTQMDEGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQGAA--SIPA-AP 527 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 315 bits (808), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 214/505 (42%), Positives = 310/505 (61%), Gaps = 7/505 (1%) Query: 1 LRLAFCLLLLMLIGMAVFSYDRMSRINTQVDQLGRINVPAMESVSGIRIGMAQYRMG--- 57 L L+F +++ + + +F+ + ++N ++ +P M++ ++ + R+ Sbjct: 13 LALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQGSLPPLRLNELE 72 Query: 58 VTLSLLPDDGSGGKAAEEARRDGLAYAEKYLQILVDFASNDDERATSRQLVASWKAYREL 117 + ++ P + + AA +A +D L + I S E+ Q + + AY ++ Sbjct: 73 LVTAVTPQERA---AANKAIKDRLDALTRQRAIFEQRMSEPQEKEQYAQFLKNLTAYVKV 129 Query: 118 AGKAVALAQAGQSSEA-LMLAADSAQPYEQMASILKFISDSVSQESAASVVDGEQAYRSA 176 + +A Q E + DSA+ Y M L I + SA + + +R A Sbjct: 130 DEQLAEMAANQQYDETRALFNGDSAKLYRSMVGNLDAIVKINTSGSAQADEEASTVFRGA 189 Query: 177 WRALLAVSVAALLCTLGLARLLIRGIATPLQRAVEAANRIAEGALDQDIVVHGRDEIAQL 236 R ++ + A +L LA L+ ++ PL+ AV+ A R+A G L I GRDE L Sbjct: 190 QRWIVGLLAATVLIASLLAFLVATNVSRPLKEAVQIAQRVARGDLTLRIRPAGRDETGAL 249 Query: 237 LSAMQRMQHALVGIVAGVRREAEHVATASVEIASGNADLSTRTEAQAAALEETAATMNEL 296 + A++ M +L IV+ VR+ + + TAS EIA GN DLS RTE QA +LEETA+ M EL Sbjct: 250 MEALRAMNESLRDIVSEVRQGTDTITTASHEIARGNLDLSNRTEQQAGSLEETASAMEEL 309 Query: 297 NATVQKNADDAREASSTAQQASAVALQGGQVVQQVVQTMRGIEDSSQRISEIVGTIDGIA 356 +TV +NAD+AR+A+ A AS +A QGG+VV QVVQTM GI +SS+RI++I+ IDGIA Sbjct: 310 TSTVTQNADNARQANQLAATASDIASQGGEVVGQVVQTMEGITESSRRIADIISVIDGIA 369 Query: 357 FQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSSLAARETKTLIHESVARIQTGA 416 FQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRS+ AA+E K LI +SV ++ G+ Sbjct: 370 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDDSVQKVSAGS 429 Query: 417 RLVDQAGQTMEEIVAAVRSVSAIVAQISQASLAQSGDIAEVEGAIRQLDDALQQNAALVE 476 LV++AG TM E+VA+VR V+ +VA+IS A+ QSG I EV AI Q+D+ QQNAALVE Sbjct: 430 ALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDETTQQNAALVE 489 Query: 477 QSAAASESLRQQAGNLLGTVSVFRI 501 Q+AAA++SL+ QA NL V F++ Sbjct: 490 QAAAAADSLKGQASNLAAVVGKFKL 514 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 311 bits (796), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 214/509 (42%), Positives = 316/509 (62%), Gaps = 15/509 (2%) Query: 1 LRLAFCLLLLMLIGMAVFSYDRMSRINTQVDQLGRINVPAMESVSGIRIGMAQYRMG--- 57 L ++F ++++ + + +F+ + +N + +P +++ I+ + + R+ Sbjct: 13 LIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQASLPRMRISELQ 72 Query: 58 VTLSLLPDDGSGGKAAEEARRDGLAYAEKYLQILVDFASNDDERATSRQLVASWKAYREL 117 + + P + A ++R D LA + + S +E+ + S+ Y E+ Sbjct: 73 MVTAATPAEREDALKAIKSRLDILAKQRAAYEAQI---SEAEEKVLYEKFSKSFATYLEI 129 Query: 118 AGKAVALAQAGQSSEA-LMLAADSAQPY----EQMASILKFISDSVSQESAASVVDGEQA 172 + ++ G+ EA + DS + + E M I+K ++D+ S+ S EQ Sbjct: 130 DKELARISAEGKEEEARALFKGDSNKTFRSMIENMDEIIK-VNDAGSKRSDDM---AEQV 185 Query: 173 YRSAWRALLAVSVAALLCTLGLARLLIRGIATPLQRAVEAANRIAEGALDQDIVVHGRDE 232 YRSA ++ + A ++ LGLA ++ R ++ PL AV A R+A+G L DI DE Sbjct: 186 YRSATLWIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQGDLTMDIRATSTDE 245 Query: 233 IAQLLSAMQRMQHALVGIVAGVRREAEHVATASVEIASGNADLSTRTEAQAAALEETAAT 292 L+ +++ M +L IV VR + + TAS EIA+GN DLS+RTE QA +LEETA+ Sbjct: 246 TGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAGSLEETASA 305 Query: 293 MNELNATVQKNADDAREASSTAQQASAVALQGGQVVQQVVQTMRGIEDSSQRISEIVGTI 352 M EL ATV++NAD+AR+A+ A AS +A QGG VV QVVQTM GI +SS RI++I+ I Sbjct: 306 MEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNRIADIISVI 365 Query: 353 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSSLAARETKTLIHESVARI 412 DGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRS+ AA+E K LI +SV ++ Sbjct: 366 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVEKV 425 Query: 413 QTGARLVDQAGQTMEEIVAAVRSVSAIVAQISQASLAQSGDIAEVEGAIRQLDDALQQNA 472 G++LV++AG TM E+VA+VR V+ +VA+IS AS QS I E+ AI Q+D+ QQNA Sbjct: 426 GAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMDEVTQQNA 485 Query: 473 ALVEQSAAASESLRQQAGNLLGTVSVFRI 501 ALVE++AAA++SL+ QA L VSVF++ Sbjct: 486 ALVEEAAAAAQSLQDQAARLSQVVSVFKL 514 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.126 0.328 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,084,858 Number of extensions: 35987 Number of successful extensions: 450 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 301 Number of HSP's successfully gapped: 70 Length of query: 522 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 432 Effective length of database: 1,193,720 Effective search space: 515687040 Effective search space used: 515687040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)