BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0019.p
         (352 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313236|ref|YP_003777328.1| hypothetical protein Hsero_3949...   701   0.0  

>gi|300313236|ref|YP_003777328.1| hypothetical protein Hsero_3949
           [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/345 (99%), Positives = 344/345 (99%)

Query: 8   MQGTILVGTAGQGIVRSVDNGATWHRLGLKEAIEFDGVVRSLAVDPSDPARVLAGADAGI 67
           MQGTILVGTAGQGIVRSVDNGATWHRLGLKEAIEFDGVVRSLAVDPSDPARVLAGADAGI
Sbjct: 1   MQGTILVGTAGQGIVRSVDNGATWHRLGLKEAIEFDGVVRSLAVDPSDPARVLAGADAGI 60

Query: 68  CLSTDGGAHFKRIASPADDQTVWSIAFSPSNPKLVFAGTGAPSRARMYRSRDGGLSWQQL 127
           CLSTDGGAHFKRIASPADDQTVWSIAFSPSNPKLVFAGTGAPSRARMYRSRDGGLSWQQL
Sbjct: 61  CLSTDGGAHFKRIASPADDQTVWSIAFSPSNPKLVFAGTGAPSRARMYRSRDGGLSWQQL 120

Query: 128 DVELPEFCSGVHKPRILTIFVRPDAPQEVWFGVEEGGAWRSNDEGDTWTRIDTPGRGINN 187
           DVELPEFCSGVHKPRILTIFVR DAPQEVWFGVEEGGAWRSNDEGDTWTRIDTPGRGINN
Sbjct: 121 DVELPEFCSGVHKPRILTIFVRADAPQEVWFGVEEGGAWRSNDEGDTWTRIDTPGRGINN 180

Query: 188 SDIHAITVLPATADAPVKHVVVTVNSVCESTDDAASFTAKASKERFDGMYYTRTIQALDP 247
           SDIHAITVLPATADAPVKHVVVTVNSVCESTDDAASFTAKASKERFDGMYYTRTIQALDP
Sbjct: 181 SDIHAITVLPATADAPVKHVVVTVNSVCESTDDAASFTAKASKERFDGMYYTRTIQALDP 240

Query: 248 EGNQLLLAIGDGTPGTRTRIYRSEDRGQSWQAAVLHTAPNSTVWAFGGHPSDPQLLFAGT 307
           EGNQLLLAIGDGTPGTRTRIYRSEDRGQ+WQA+VLHTAPNSTVWAFGGHPSDPQLLFAGT
Sbjct: 241 EGNQLLLAIGDGTPGTRTRIYRSEDRGQNWQASVLHTAPNSTVWAFGGHPSDPQLLFAGT 300

Query: 308 KYGYLLRSTDGGRSWYKEWRDFSEITSVAWTPFVAPVHAHPQSID 352
           KYGYLLRSTDGGRSWYKEWRDFSEITSVAWTPFVAPVHAHPQSID
Sbjct: 301 KYGYLLRSTDGGRSWYKEWRDFSEITSVAWTPFVAPVHAHPQSID 345


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,341,721
Number of extensions: 63383
Number of successful extensions: 191
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 266
Effective length of database: 1,212,660
Effective search space: 322567560
Effective search space used: 322567560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)