BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0017.p (550 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313238|ref|YP_003777330.1| acetolactate synthase [Herbaspi... 1086 0.0 gi|300310483|ref|YP_003774575.1| benzoylformate decarboxylase [H... 108 1e-24 >gi|300313238|ref|YP_003777330.1| acetolactate synthase [Herbaspirillum seropedicae SmR1] Length = 550 Score = 1086 bits (2808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 543/550 (98%), Positives = 544/550 (98%) Query: 1 MPQTSLPQRPGWSVQPRRSACAALAAGGKGREMTRYTGAHALWAGLLDQGVDTCFANPGT 60 MPQTS PQRPGWSVQPRRSACAALAAGGKGREMTRYTGAHALWAGLLDQGVDTCFANPGT Sbjct: 1 MPQTSQPQRPGWSVQPRRSACAALAAGGKGREMTRYTGAHALWAGLLDQGVDTCFANPGT 60 Query: 61 TELDLVRGLESFPKLRCVVALQENVCTGAADGYGRMLGRPASTLLHLGPGFANGIANLHN 120 TELDLVRGLESFPKLRCVVALQENVCTGAADGYGRMLGRPASTLLHLGPGFANGIANLHN Sbjct: 61 TELDLVRGLESFPKLRCVVALQENVCTGAADGYGRMLGRPASTLLHLGPGFANGIANLHN 120 Query: 121 ARRARTPIVNIIGDHTSWHLPYDAPLSSDIESLAHPVSGWVHRITGTADIAAAAAESVRQ 180 ARRARTPIVNIIGDHTSWHLPYDAPLSSDIESLAHPVSGWVHRITGTADIAAAAAESVRQ Sbjct: 121 ARRARTPIVNIIGDHTSWHLPYDAPLSSDIESLAHPVSGWVHRITGTADIAAAAAESVRQ 180 Query: 181 STAAGGQGSTLIFPADFQYADMAEESPAAATEKDTGQADDYRADQALARLQSAQRVVFLL 240 STAAGGQGSTLIFPADFQYADMAE SPAAATEKDTGQADDYRADQALARLQ AQRVVFLL Sbjct: 181 STAAGGQGSTLIFPADFQYADMAEASPAAATEKDTGQADDYRADQALARLQGAQRVVFLL 240 Query: 241 GGGGEESGLGGWAQRAVARIAAHIGCSVYAETFPARAERGQGLPSFDRLPYFPEPARKVL 300 GGGGEESGLG AQRAVARIAAHIGCSVYAETFPARAERGQGLPSFDRLPYFPEPARKVL Sbjct: 241 GGGGEESGLGARAQRAVARIAAHIGCSVYAETFPARAERGQGLPSFDRLPYFPEPARKVL 300 Query: 301 DDADLVVLVGALPPITYFGYVGHPSALVAPERLLTISLPGRPAAGRVEQLADALGAPAYV 360 DDADLVVLVGALPPITYFGYVGHPSALVAPERLLTISLPGRPAAGRVEQLADALGAPAYV Sbjct: 301 DDADLVVLVGALPPITYFGYVGHPSALVAPERLLTISLPGRPAAGRVEQLADALGAPAYV 360 Query: 361 TPQHALPALPEGELTPQKIAAVLARELPERAIVSVEGGTCGYPFYAVSDAARPHTVLTNT 420 TPQHALP LPEGELTPQKIAAVLARELPERAIVSVEGGTCGYPFYAVSDAARPHTVLTNT Sbjct: 361 TPQHALPPLPEGELTPQKIAAVLARELPERAIVSVEGGTCGYPFYAVSDAARPHTVLTNT 420 Query: 421 GGAIGQGLPVALGAAVACPERTVVGLLSDGSTQYTIQTLWSLAHENARVVVLIAANHQYA 480 GGAIGQGLPVALGAAVACP+RTVVGLLSDGSTQYTIQTLWSLAHENARVVVLIAANHQYA Sbjct: 421 GGAIGQGLPVALGAAVACPDRTVVGLLSDGSTQYTIQTLWSLAHENARVVVLIAANHQYA 480 Query: 481 ILRNELRRDGAPLGERAAQMTALDHPRIDWVGLAQSYGVPASRAETAQQLQQQLQAAFAG 540 ILRNELRRDGAPLGERAAQMTALDHPRIDWVGLAQSYGVPASRAETAQQLQQQLQAAFAG Sbjct: 481 ILRNELRRDGAPLGERAAQMTALDHPRIDWVGLAQSYGVPASRAETAQQLQQQLQAAFAG 540 Query: 541 TGPALIEMAL 550 TGPALIEMAL Sbjct: 541 TGPALIEMAL 550 >gi|300310483|ref|YP_003774575.1| benzoylformate decarboxylase [Herbaspirillum seropedicae SmR1] Length = 532 Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 149/561 (26%), Positives = 220/561 (39%), Gaps = 86/561 (15%) Query: 37 TGAHALWAGLLDQGVDTCFANPGTTELDLVRGLESFPK-LRCVVALQENVCTGAADGYGR 95 T HA+ + G+ + FANPG+TEL + R FP+ R V+ LQE V G ADG+ + Sbjct: 10 TVRHAVLDLMRRLGMTSVFANPGSTELPMFR---DFPEDFRYVLGLQEAVVVGMADGFAQ 66 Query: 96 MLGRPASTLLHLGPGFANGIANLHNARRARTPIVNIIGDHTSWHLPYDAPL-SSDIESLA 154 G A LH G N + N+ A R RTP++ G LP+D L ++ LA Sbjct: 67 ASGNAALVNLHSAAGVGNAMGNIFTAFRNRTPLIITAGQQARSILPFDPFLGATQATELA 126 Query: 155 HPVSGWVHRITGTADIAAAAAESVRQSTAAGGQGSTLIFPADFQYADMAEESPAAATEKD 214 P W AD+ A A + + + P D + AE P Sbjct: 127 KPYLKWSIEPARAADVPLALARAYHMAMQEPRGPVFVSIPVD-DWDQPAELVPPTQVTSR 185 Query: 215 TGQADDYRADQALARLQSAQRVVFLLGGGGEESGLGGWAQRAVARIAAHIGCSVYAETFP 274 + + + A L+ +QR ++ G E G W A +A + V+ Sbjct: 186 C-RPEPAAIARLAAALEQSQRPAIVV--GAELDRAGAW--DAAIALAETLRARVFVAPMS 240 Query: 275 ARAERGQGLPSF-DRLPYFPEPARKVLDDADLVVLVGALPPITY---------------F 318 +R + P F LP E + L DL+ +GA P TY F Sbjct: 241 SRCSFPEDHPLFAGFLPAMREKIVQALQGHDLLFALGA-PAFTYHVEGSGPHVPPGAALF 299 Query: 319 GYVGHP---------SALVAPERLLTISL---------------PGRPAAGRVEQLADAL 354 + P A+V +L L P RPA RVE Sbjct: 300 QLIDDPVTASWTPTGQAIVGNIQLGLDDLLAQIRRQPPTQRAQPPARPARARVE------ 353 Query: 355 GAPAYVTPQHALPALPEGELTPQKIAAVLARELP-ERAIVSVEGGTCGYPFYAVSDAARP 413 A A ++ +AL L + ++ ++ E P R ++ PF RP Sbjct: 354 -ASAPLSMAYALQTLADV----REAGDIVVEEAPGSRPVMQAH-----LPF------TRP 397 Query: 414 HTVLTNTGGAIGQGLPVALGAAVACPERTVVGLLSDGSTQYTIQTLWSLAHENARVVVLI 473 + T G +G G+P A+G A+A P V+GL+ DGS Y+ Q ++S + +I Sbjct: 398 GSFYTMASGGLGYGMPAAVGVALARPHSRVIGLIGDGSAMYSPQAIYSAVQLGLPITFVI 457 Query: 474 AANHQYAILRNELRRDGAPLG----ERAAQMTALDHPRIDWVGLAQSYGVPASRAETAQQ 529 N +YA L +D AP+ E T L P +D+V LA S G R A Sbjct: 458 LNNGRYAAL-----QDFAPVFGFGPEDPVHGTEL--PGLDFVALAHSMGCHGVRVSQAAA 510 Query: 530 LQQQLQAAFAGTGPALIEMAL 550 L L+ A L+E+ + Sbjct: 511 LAPALREALCSNETRLVEIVV 531 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,890,927 Number of extensions: 85946 Number of successful extensions: 347 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 346 Number of HSP's successfully gapped: 4 Length of query: 550 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 460 Effective length of database: 1,193,720 Effective search space: 549111200 Effective search space used: 549111200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)