BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0016.p
         (238 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313239|ref|YP_003777331.1| transcription regulator protein...   484   e-138
gi|300311600|ref|YP_003775692.1| transcription regulator protein...    80   2e-16

>gi|300313239|ref|YP_003777331.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score =  484 bits (1245), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 237/238 (99%), Positives = 238/238 (100%)

Query: 1   MLEVLTLFKPSQPVIDIELICAQLGYTPASAYRYVRELGNAGLLVKMPRGYAVGPKVIEL 60
           MLEVLTLFKPSQPVIDIELICAQLGYTPASAYRYVRELGNAGLLVKMPRGYAVGPKVIEL
Sbjct: 7   MLEVLTLFKPSQPVIDIELICAQLGYTPASAYRYVRELGNAGLLVKMPRGYAVGPKVIEL 66

Query: 61  DRHMTQFDPLLSASRDIVGDLVAQTGLELLISELYGSTVITILQESGSSDARLNFGRGTP 120
           DRHMTQFDPLLSASRDIVGDLVAQTGLELLISELYGSTVITILQESGS+DARLNFGRGTP
Sbjct: 67  DRHMTQFDPLLSASRDIVGDLVAQTGLELLISELYGSTVITILQESGSNDARLNFGRGTP 126

Query: 121 MDLFHSATARVILAYLLPRQLRKHFDGASAEELRLVGSNWRDFSKVMLKIRKDGYCVSEG 180
           MDLFHSATARVILAYLLPRQLRKHFDGASAEELRLVGSNWRDFSKVMLKIRKDGYCVSEG
Sbjct: 127 MDLFHSATARVILAYLLPRQLRKHFDGASAEELRLVGSNWRDFSKVMLKIRKDGYCVSEG 186

Query: 181 ELDAGKTGIAAPIFDEKQRILGSITLAGNTERVNAFNREFLSGLITDAARKITARIAG 238
           ELDAGKTGIAAPIFDEKQRILGSITLAGNTERVNAFNREFLSGLITDAARKITARIAG
Sbjct: 187 ELDAGKTGIAAPIFDEKQRILGSITLAGNTERVNAFNREFLSGLITDAARKITARIAG 244


>gi|300311600|ref|YP_003775692.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 292

 Score = 79.7 bits (195), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 113/228 (49%), Gaps = 17/228 (7%)

Query: 15  IDIELICAQLGYTPASAYRYVRELGNAGLLVK-MPRG-YAVGPKVIELDRHMTQFDPLLS 72
           +  + I A +    ++ YR++  L   GLL + M  G +  GP  ++L     Q   L+S
Sbjct: 74  VSAKQIAAMVQQPVSTVYRHLASLKKWGLLQEHMNSGTFEPGPTGVQLAWGFDQNSNLVS 133

Query: 73  ASRDIVGDLVAQTGLEL-LISELYGSTVITILQESGSSDARLNFGRGTPMDLFHSATARV 131
            SR+ +  LV ++G  + L+  + G  V   ++ES     R +F +G    L   A+A+ 
Sbjct: 134 QSREEISSLVQRSGESVGLLVAINGQMVCIAMEES-DQPLRCSFTKGRAHPLLKGASAKS 192

Query: 132 ILAYLLPRQLRKHFD----GASAEELRLVGSNWRDFSKVMLKIRKDGYCVSEGELDAGKT 187
           +LA++ PR+L++       G   EEL  + +   +       IR+ GYC+SE E+D G  
Sbjct: 193 LLAFM-PRKLQQKLLTDQLGDKPEELAALETQLEE-------IRRRGYCISESEVDLGVW 244

Query: 188 GIAAPIFDEKQRILGSITLAGNTERVNAFNREFLSGLITDAARKITAR 235
           G++ PI     R+ G+ITL     RV    +E +  +  ++A++I  R
Sbjct: 245 GVSVPIMTSNGRLEGTITLMAPALRVGNREQELVR-MTLESAQRICNR 291


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 753,285
Number of extensions: 32280
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 4
Length of query: 238
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 156
Effective length of database: 1,231,600
Effective search space: 192129600
Effective search space used: 192129600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)