BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0015.p (328 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313240|ref|YP_003777332.1| AraC family transcription regul... 677 0.0 gi|300310610|ref|YP_003774702.1| AraC family transcription regul... 436 e-124 gi|300311835|ref|YP_003775927.1| AraC family ethanolamine operon... 119 3e-28 gi|300312820|ref|YP_003776912.1| AraC family transcription regul... 106 2e-24 gi|300312312|ref|YP_003776404.1| AraC family ethanolamine operon... 97 1e-21 >gi|300313240|ref|YP_003777332.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 328 Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/328 (100%), Positives = 328/328 (100%) Query: 1 MLQSIHRFQDVHVHAAAIGAWKQTYAQISAGKLESSLMQLSTRRCHAFRERINKRVVQHG 60 MLQSIHRFQDVHVHAAAIGAWKQTYAQISAGKLESSLMQLSTRRCHAFRERINKRVVQHG Sbjct: 1 MLQSIHRFQDVHVHAAAIGAWKQTYAQISAGKLESSLMQLSTRRCHAFRERINKRVVQHG 60 Query: 61 EAPRDQICFAFPIAAPGAAHVQGREADDKSILFLQGGEEFMFHMPMDTDLLSLTFDRDLF 120 EAPRDQICFAFPIAAPGAAHVQGREADDKSILFLQGGEEFMFHMPMDTDLLSLTFDRDLF Sbjct: 61 EAPRDQICFAFPIAAPGAAHVQGREADDKSILFLQGGEEFMFHMPMDTDLLSLTFDRDLF 120 Query: 121 EEHLHQMPDPDRIAALLKQPVIKVPPKGLRACRERLLTLFSHAMLQFDDGPRQADMPSVQ 180 EEHLHQMPDPDRIAALLKQPVIKVPPKGLRACRERLLTLFSHAMLQFDDGPRQADMPSVQ Sbjct: 121 EEHLHQMPDPDRIAALLKQPVIKVPPKGLRACRERLLTLFSHAMLQFDDGPRQADMPSVQ 180 Query: 181 TLQREQALESSLLGELLGLLCAPDCDPVRQMSTTRSYIVEKLHRQTIVDAANVPSIFEVC 240 TLQREQALESSLLGELLGLLCAPDCDPVRQMSTTRSYIVEKLHRQTIVDAANVPSIFEVC Sbjct: 181 TLQREQALESSLLGELLGLLCAPDCDPVRQMSTTRSYIVEKLHRQTIVDAANVPSIFEVC 240 Query: 241 QRLQVSRRTVQNSFQTVAETTPLNYLRCVRLNGVRRELLSTTHQEASIGDIASRWGFFHL 300 QRLQVSRRTVQNSFQTVAETTPLNYLRCVRLNGVRRELLSTTHQEASIGDIASRWGFFHL Sbjct: 241 QRLQVSRRTVQNSFQTVAETTPLNYLRCVRLNGVRRELLSTTHQEASIGDIASRWGFFHL 300 Query: 301 SHFAEDYQALFGELPSQTARRVPQKIFQ 328 SHFAEDYQALFGELPSQTARRVPQKIFQ Sbjct: 301 SHFAEDYQALFGELPSQTARRVPQKIFQ 328 >gi|300310610|ref|YP_003774702.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 436 bits (1122), Expect = e-124, Method: Compositional matrix adjust. Identities = 225/321 (70%), Positives = 257/321 (80%), Gaps = 7/321 (2%) Query: 1 MLQSIHRFQDVHVHAAAIGAWKQTYAQISAGKLESSLMQLSTRRCHAFRERINKRVVQHG 60 MLQS+ RFQDVH HAAAI W YAQISAGK+ESSL+QLST RCH FRERIN+RVVQ G Sbjct: 1 MLQSVLRFQDVHEHAAAISPWNLHYAQISAGKVESSLLQLSTPRCHVFRERINQRVVQQG 60 Query: 61 EAPRDQICFAFPIAAPGAAHVQGREADDKSILFLQGGEEFMFHMPMDTDLLSLTFDRDLF 120 EAPR+Q+CFAFP+AAPG AHVQGRE D+ +LFLQGG+EFM H+P+DTDL ++TFDR LF Sbjct: 61 EAPREQVCFAFPVAAPGKAHVQGREVDEHCMLFLQGGDEFMCHLPIDTDLFAITFDRALF 120 Query: 121 EEHLHQMPDPDRIAALLKQPVIKVPPKGLRACRERLLTLFSHAMLQFDDGPRQADMPSVQ 180 E L P+RI AL+KQPV+KV + L ACRERLL +F AML +DG Q Sbjct: 121 EAQLEHTASPERIVALMKQPVVKVASQDLHACRERLLNIFYWAMLSIEDGHGQHP----- 175 Query: 181 TLQREQALESSLLGELLGLLCAPDCDPVRQMSTTRSYIVEKLHRQTIVDAANVPSIFEVC 240 Q EQ LE SLL ELL LL APDC RQ+ST RSYIV+KLHRQT+ DA NVPSIFEVC Sbjct: 176 --QHEQELELSLLAELLALLSAPDCGASRQISTIRSYIVDKLHRQTMNDAINVPSIFEVC 233 Query: 241 QRLQVSRRTVQNSFQTVAETTPLNYLRCVRLNGVRRELLSTTHQEASIGDIASRWGFFHL 300 +++QVSRRTVQNSFQTV ETTP NYLRCVRLNGVRR L+ST+ ++ +IGDIASRWGFFHL Sbjct: 234 EQMQVSRRTVQNSFQTVTETTPRNYLRCVRLNGVRRALMSTSAEQITIGDIASRWGFFHL 293 Query: 301 SHFAEDYQALFGELPSQTARR 321 SHFAEDY+ALF ELPSQT RR Sbjct: 294 SHFAEDYRALFCELPSQTIRR 314 >gi|300311835|ref|YP_003775927.1| AraC family ethanolamine operon transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 332 Score = 119 bits (298), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 90/314 (28%), Positives = 147/314 (46%), Gaps = 22/314 (7%) Query: 9 QDVHVHAAAIGAWKQTYAQISAGKLESSLMQLSTRRCHAFRERINKRVVQHGEAPRDQIC 68 +DV HA + W+Q Y QI+ G E L + + FRE ++ V Q + D Sbjct: 26 RDVDEHAHNLTDWEQRYDQITCGSFEGVLQEWQSDGLQIFREASSRAVRQSCQVWPDAYW 85 Query: 69 FAFPIAAPGAAHVQGREADDKSILFLQGGEEFMFHMPMDTDLLSLTFDRDLFEEHLHQM- 127 F G + GR+ + ++ G EF P ++ + RD + ++ Sbjct: 86 FGIEARTTGM-RINGRQVGEDVVMTRPGACEFELVTPDAHEIYGIVVQRDALQASAARLG 144 Query: 128 --PDPDRIAALLKQPVIKVPPKGLRACRERLLTLFSHAMLQFDDGPRQADMPSVQTLQRE 185 PD R+ + ++KV GL CR+++ L + A G ++Q Q Sbjct: 145 CQPDWQRLG---QAELLKVDHGGLEDCRQQIAALLAMA------GQASGAHAALQLRQ-- 193 Query: 186 QALESSLLGELLGLLCAPDCDPVRQMSTTRSYIVEKLHRQTIVDAANVP-SIFEVCQRLQ 244 ++L LL +L + + S R + R+ + + P ++ +C+ + Sbjct: 194 ----EAVLVALLAMLDEGEIEAEAGASFLRRRRIVNDAREFAMAHQDSPVTVPMLCEAVH 249 Query: 245 VSRRTVQNSFQTVAETTPLNYLRCVRLNGVRRELLSTTHQEA--SIGDIASRWGFFHLSH 302 VSRRT+Q F+ V +P++YLR +RLNGVRR L ++A SIGDIA+ WGF + S Sbjct: 250 VSRRTLQYCFEDVLGMSPMSYLRSLRLNGVRRALCHGDGRQAVGSIGDIAAAWGFANFSQ 309 Query: 303 FAEDYQALFGELPS 316 F+ DY+ LFG+ PS Sbjct: 310 FSCDYKKLFGQTPS 323 >gi|300312820|ref|YP_003776912.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 331 Score = 106 bits (265), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 89/330 (26%), Positives = 146/330 (44%), Gaps = 22/330 (6%) Query: 4 SIH--RFQDVHVHAAAIGAWKQTYAQISAGKLESSLMQLSTRRCHAFRERINKRVVQHGE 61 S+H +F DV A+ + W+Q Y Q+ +G+ + +L + T RER N + + Sbjct: 7 SVHAVQFSDVDEQASMLTGWEQEYQQLGSGRFDGALGMVQTEDFCFIRERTNTALHERMV 66 Query: 62 APRDQICFAFPIAAPGAAHVQGREADDKSILFLQGGEEFMFHMPMDTDLLSLTFDRDLFE 121 P Q+ ++ + GR ++ L G +L+ ++ RDLF Sbjct: 67 PPPGQMVIGICNSSERGHLLNGRPLGQDQLIVLDGSRAHHIRTTGPIELMGISMQRDLFL 126 Query: 122 EHLHQMPDPDRIAALLKQPVIKVPPKGLRACRERLLTLFSHAMLQFDDGPRQADMPSVQT 181 LH+ D + L V+++ P A L FS A D A +V Sbjct: 127 SQLHEQDDAS-VRKWLDLSVLQLDP----ATAGMLRHYFSLAF----DLLNTAQGKTVHP 177 Query: 182 LQREQALESSLLGELLGLLC----APDCDPVRQMSTTRSYIVEKLHRQTIVDAANVPSIF 237 + +AL S+++ + L + D + R IV+ A I Sbjct: 178 IS-PRALASTVISNVALALSLNHGSNDLESTLPSRQRRERIVQNAIDYMRAHAGEEIGIL 236 Query: 238 EVCQRLQVSRRTVQNSFQTVAETTPLNYLRCVRLNGVRRELLSTTHQE------ASIGDI 291 +VC+ VSRRT+Q F+ + +PL YL+ +RLN RE+ T ++ A+IG++ Sbjct: 237 DVCRATHVSRRTLQYCFEERLDISPLQYLKALRLNAAHREIKRRTGEDRAHDRHATIGNL 296 Query: 292 ASRWGFFHLSHFAEDYQALFGELPSQTARR 321 A+ GF H S FA +Y+ +FG LPS+T R Sbjct: 297 AALCGFNHPSRFASEYKKMFGVLPSETVLR 326 >gi|300312312|ref|YP_003776404.1| AraC family ethanolamine operon transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 358 Score = 97.4 bits (241), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 88/308 (28%), Positives = 137/308 (44%), Gaps = 30/308 (9%) Query: 27 QISAGKLESSLMQLSTRRCHAFRERINKRVVQHGEAPRDQICFAFPIAAPGAAHVQGREA 86 Q+S GKL SL +RER +K +++ G + F+F + A G + GR Sbjct: 44 QMSPGKLNYSLSMSQLGHIQIYRERSDKPLLKRGVNWPGSLVFSFVVQARGRGWLSGRAV 103 Query: 87 DDKSILFLQGGEEFMFHMPMDTDLLSLTFDRDLFEEHL-----HQMPDPDRIA------- 134 D ++ L G P + DL+ + DR E + Q+ R Sbjct: 104 DPQASLVADGEALPEIITPAELDLVFIVVDRQWLSERIGDGASRQIAGSARDLRCFAAWH 163 Query: 135 --ALLKQPVIKVPPKGLRACRERLLTLFSHAMLQFDDGPRQADMPSVQTLQREQALESSL 192 AL+ + + + P R + H L PR + +L + LE+ L Sbjct: 164 EHALVLRRLFPLLPGQARLGQPS--PSIGHCAL----APRSS--AGGGSLAEDMVLEALL 215 Query: 193 LGELLGLLCAPDCDPVRQMSTTRSYIVEKLHRQTIVDAANVPSIFEVCQRLQVSRRTVQN 252 ++LG + +R+ R ++++ R DA ++ +V L VSRR +Q Sbjct: 216 --DVLG--SVHRVEALRETDHKR--LIDQARRLMRGDAPERATMTQVAAHLGVSRRHLQT 269 Query: 253 SFQTVAETTPLNYLRCVRLNGVRRELLSTTHQ--EASIGDIASRWGFFHLSHFAEDYQAL 310 F T + ++R RLN VR+ L+ E SIGDIA+ WGF+HLS FA DY+ + Sbjct: 270 CFNTSVGIPAIEFVRAERLNQVRKALVEARRAGLEVSIGDIAADWGFWHLSRFAADYRDM 329 Query: 311 FGELPSQT 318 FGELPS+T Sbjct: 330 FGELPSKT 337 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.136 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 947,574 Number of extensions: 35648 Number of successful extensions: 138 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 133 Number of HSP's successfully gapped: 6 Length of query: 328 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 242 Effective length of database: 1,212,660 Effective search space: 293463720 Effective search space used: 293463720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)