BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0010.p
         (109 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313242|ref|YP_003777334.1| alanine racemase [Herbaspirillu...   221   7e-60
gi|300311465|ref|YP_003775557.1| alanine racemase [Herbaspirillu...    72   8e-15

>gi|300313242|ref|YP_003777334.1| alanine racemase [Herbaspirillum
           seropedicae SmR1]
          Length = 368

 Score =  221 bits (564), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 109/109 (100%), Positives = 109/109 (100%)

Query: 1   VGYNHTWQASRPTRVGTIALGYADGYLRSASNRGVLRLEGVEAPLIGRVSMDSITVDLSA 60
           VGYNHTWQASRPTRVGTIALGYADGYLRSASNRGVLRLEGVEAPLIGRVSMDSITVDLSA
Sbjct: 260 VGYNHTWQASRPTRVGTIALGYADGYLRSASNRGVLRLEGVEAPLIGRVSMDSITVDLSA 319

Query: 61  IDPARLRPGLLFDVLDAQQDINALAVQAGTNAYEILTSLRHRYRRHYLE 109
           IDPARLRPGLLFDVLDAQQDINALAVQAGTNAYEILTSLRHRYRRHYLE
Sbjct: 320 IDPARLRPGLLFDVLDAQQDINALAVQAGTNAYEILTSLRHRYRRHYLE 368


>gi|300311465|ref|YP_003775557.1| alanine racemase [Herbaspirillum
           seropedicae SmR1]
          Length = 359

 Score = 72.4 bits (176), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 62/102 (60%), Gaps = 2/102 (1%)

Query: 1   VGYNHTWQASRPTRVGTIALGYADGYLRSASNRGVLRLEGVEAPLIGRVSMDSITVDLSA 60
           +GY   + A +P ++G +A GYADGY R A N   + ++GV+   +GRVSMD +TVDL+ 
Sbjct: 253 IGYGSRFVADKPMKIGVVACGYADGYPRHAPNGTPVLVDGVKTGTVGRVSMDMLTVDLTH 312

Query: 61  IDPARLRPGLLFDVLDAQQDINALAVQAGTNAYEILTSLRHR 102
           I  A +  G   ++  ++  I+ +A  AGT  YE++ +L  R
Sbjct: 313 IPDADV--GSQVELWGSKLPIDEVAYAAGTIGYELMCALAPR 352


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 358,473
Number of extensions: 13554
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 2
Length of query: 109
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 37
Effective length of database: 1,278,950
Effective search space: 47321150
Effective search space used: 47321150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)