BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0006.p (943 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313244|ref|YP_003777336.1| multidrug efflux system transme... 1672 0.0 gi|300309819|ref|YP_003773911.1| acriflavin resistance transmemb... 976 0.0 gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump pr... 817 0.0 gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump pr... 813 0.0 gi|300309657|ref|YP_003773749.1| cation/multidrug efflux pump pr... 495 e-141 >gi|300313244|ref|YP_003777336.1| multidrug efflux system transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1033 Score = 1672 bits (4329), Expect = 0.0, Method: Compositional matrix adjust. Identities = 861/865 (99%), Positives = 862/865 (99%) Query: 1 MPRFFIDRPIFAWVVALFIVLFGVIAMSQLPIARYPSVAPPTVSINATYPGATPQTMNDG 60 MPRFFIDRPIFAWVVALFIVLFGVIAMSQLPIARYPSVAPPTVSINATYPGATPQTMNDG Sbjct: 1 MPRFFIDRPIFAWVVALFIVLFGVIAMSQLPIARYPSVAPPTVSINATYPGATPQTMNDG 60 Query: 61 VISLIERELSGVKNLLYFESSADTSGTAQISVTFKPGTDPELAQVDVQNKLKAIEARLPQ 120 VISLIERELSGVKNLLYFESSADTSGTAQISVTFKPGTDPELAQVDVQNKLKAIEARLPQ Sbjct: 61 VISLIERELSGVKNLLYFESSADTSGTAQISVTFKPGTDPELAQVDVQNKLKAIEARLPQ 120 Query: 121 TVRQNGVTVESAASSFLLMVSLTSVDGRYDEVRLNDYLARNIVEELRRMEGVGRVQLFGA 180 TVRQNGVTVESAASSFLLMVSLTSVDGRYDEVRLNDYLARNIVEELRRMEGVGRVQLFGA Sbjct: 121 TVRQNGVTVESAASSFLLMVSLTSVDGRYDEVRLNDYLARNIVEELRRMEGVGRVQLFGA 180 Query: 181 EQAMRIWIDPFKLNAYGLTVTDISTAISQQNAQIAPGRLGDAPAVRGQQIAMPLTVQGQL 240 EQAMRIW+DPFKLNAYGLTVTDISTAISQQNAQIAPGRLGDAPAVRGQQIAMPLTVQGQL Sbjct: 181 EQAMRIWLDPFKLNAYGLTVTDISTAISQQNAQIAPGRLGDAPAVRGQQIAMPLTVQGQL 240 Query: 241 QSPAQFAAIVLKAKADGSRVLLGDVARVELGAQSYAFANRENGKPAGVAAVQLSPGANAV 300 QSPAQFAAIVLKAKADGSRVLLGDVARVELGAQSYAFANRENGKPAGVAAVQLSPGANAV Sbjct: 241 QSPAQFAAIVLKAKADGSRVLLGDVARVELGAQSYAFANRENGKPAGVAAVQLSPGANAV 300 Query: 301 RTAAAIQARMEELRPSLPQGMAFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQ 360 RTAAAIQARMEELRPSLPQGMAFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQ Sbjct: 301 RTAAAIQARMEELRPSLPQGMAFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQ 360 Query: 361 NVRYTVIPAIVAPIALLGTLAVMQLAGYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIM 420 NVRYTVIPAIVAPIALLGTLAVMQLAGYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIM Sbjct: 361 NVRYTVIPAIVAPIALLGTLAVMQLAGYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIM 420 Query: 421 AHEGLGPREATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSVAMAVSILF 480 AHEGLGPREATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSVAMAVSILF Sbjct: 421 AHEGLGPREATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSVAMAVSILF 480 Query: 481 SAFLALSLTPALCATLLRPVPAGHHDKRGFFGAFNRAFNRLTARYESALGRLIARGLRMM 540 SAFLALSLTPALCATLLRPVPAGHHDKRGFFGAFNRAFNRLTARYESALGRLIARGLRMM Sbjct: 481 SAFLALSLTPALCATLLRPVPAGHHDKRGFFGAFNRAFNRLTARYESALGRLIARGLRMM 540 Query: 541 LVYAALSGLLVVGMQALPSAFLPEEDQGYFMTSFQLPADATTERTARAVDQFERYLKGRE 600 LVYAALSGLLVVGMQALPSAFLPEEDQGYFMTSFQLPADATTERTARAVDQFERYLKGRE Sbjct: 541 LVYAALSGLLVVGMQALPSAFLPEEDQGYFMTSFQLPADATTERTARAVDQFERYLKGRE 600 Query: 601 DIGANLSVLGFGFSGSGPNAAMAFTELKDWKERKGSTSAAEAMAAQAAMESGVDGMVMSL 660 DIGANLSVLGFGFSGSGPNAAMAFTELKDWKERKGSTSAAEAMAAQAAMESGVDGMVMSL Sbjct: 601 DIGANLSVLGFGFSGSGPNAAMAFTELKDWKERKGSTSAAEAMAAQAAMESGVDGMVMSL 660 Query: 661 LPPAIEELGNSSGFAMRLQDRANQGYAALKAAEAQLLALAAKSGKLSGVYSDGLPAGASV 720 LPPAIEELGNSSGFAMRLQDRANQGYAALKAAEAQLLALAAKS KLSGVYSDGLPAGASV Sbjct: 661 LPPAIEELGNSSGFAMRLQDRANQGYAALKAAEAQLLALAAKSRKLSGVYSDGLPAGASV 720 Query: 721 QLEIDRHKAAALGVSFSSISDTLSAAMGSFYVNDFPNAGRMQQVILQAQASARMQLEDVM 780 QLEIDRHKAAALGVSFSSISDTLSAAMGSFYVNDFPNAGRMQQVILQAQASARMQLEDVM Sbjct: 721 QLEIDRHKAAALGVSFSSISDTLSAAMGSFYVNDFPNAGRMQQVILQAQASARMQLEDVM 780 Query: 781 KLYVRNQSGGMVPLAELVKASWREAPTQLQRYQGFPAVRISGSAAPGVASGEAMAEMERL 840 KLYVRNQSGGMVPLAELVKASWREAPTQLQRYQGFPAVRISGSAAPGVASGEAMAEMERL Sbjct: 781 KLYVRNQSGGMVPLAELVKASWREAPTQLQRYQGFPAVRISGSAAPGVASGEAMAEMERL 840 Query: 841 AQQLPPGFAVAWTGQSLQERLSGGQ 865 AQQLPPGFAVAWTGQSLQERLS Q Sbjct: 841 AQQLPPGFAVAWTGQSLQERLSAAQ 865 >gi|300309819|ref|YP_003773911.1| acriflavin resistance transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 976 bits (2524), Expect = 0.0, Method: Compositional matrix adjust. Identities = 487/871 (55%), Positives = 629/871 (72%), Gaps = 10/871 (1%) Query: 1 MPRFFIDRPIFAWVVALFIVLFGVIAMSQLPIARYPSVAPPTVSINATYPGATPQTMNDG 60 M +FFIDRP+FAWV+A+FI+L G +A++ LP+++YP++APPT+ + ATYPGAT QT++D Sbjct: 1 MGKFFIDRPVFAWVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDS 60 Query: 61 VISLIERELSGVKNLLYFESSADTSGTAQISVTFKPGTDPELAQVDVQNKLKAIEARLPQ 120 V SLIE+E++G L Y ES + +G QI++TF P T+P+LA VDVQN+LK +EARLP Sbjct: 61 VTSLIEQEMNGADGLQYIESQSQANGQVQITITFSPETNPDLAAVDVQNRLKRVEARLPA 120 Query: 121 TVRQNGVTVESAASSFLLMVSLTSVDGRYDEVRLNDYLARNIVEELRRMEGVGRVQLFGA 180 V Q GV V + S+FLL + L+S DG+ D V L DYL+RN++ E++R+ GVG+ QLFG Sbjct: 121 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGT 180 Query: 181 EQAMRIWIDPFKLNAYGLTVTDISTAISQQNAQIAPGRLGDAPAVRGQQIAMPLTVQGQL 240 E+AMRIWIDP KL LT D++ AI QNA +A G LG P+ QQIA + V GQL Sbjct: 181 ERAMRIWIDPNKLIGLNLTPADVTAAIQAQNALVAGGTLGALPSPGTQQIAATVVVNGQL 240 Query: 241 QSPAQFAAIVLKAKADGSRVLLGDVARVELGAQSYAFANRENGKPAGVAAVQLSPGANAV 300 SP QF I+L+A A+G+ V L DVARVE+G QSY + R +GKP+ VQLSP ANA+ Sbjct: 241 TSPEQFGNIILRANANGATVRLRDVARVEVGGQSYDTSGRLDGKPSSFIGVQLSPTANAL 300 Query: 301 RTAAAIQARMEELRPSLPQGMAFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQ 360 TA A+ +MEEL P G+ +++PY+T+ FVKISI++VV+TLIEA+VLVFLVM+LFLQ Sbjct: 301 GTATAVHKKMEELAKYFPTGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQ 360 Query: 361 NVRYTVIPAIVAPIALLGTLAVMQLAGYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIM 420 N+RYT+IP IV P+ALLGT A + L G+S+NVLTMFGMVLAIGI+VDDAIVVVENVERIM Sbjct: 361 NIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIM 420 Query: 421 AHEGLGPREATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSVAMAVSILF 480 + EGL P +AT KAMG+I+GA+IGITLVL AVFIPMA GG+VG IYRQFS++M S++F Sbjct: 421 SEEGLSPADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASMVF 480 Query: 481 SAFLALSLTPALCATLLRPVPAG-HHDKRGFFGAFNRAFNRLTARYESALGRLIARGLRM 539 S +A +LTPALCAT+L+PV G HH+K+GFFG FNR FN + Y+ +G ++ + R Sbjct: 481 SVLMAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNSTASGYQGIIGGMLNKAGRY 540 Query: 540 MLVY---AALSGLLVVGMQALPSAFLPEEDQGYFMTSFQLPADATTERTARAVDQFERYL 596 M+VY A GLL V LP++FLP EDQGY +T+ QLP A+T RT V Q E Y Sbjct: 541 MIVYVLIVACVGLLYV---RLPASFLPNEDQGYIITNVQLPPGASTSRTTAVVKQIEEYY 597 Query: 597 KGREDIGANLSVLGFGFSGSGPNAAMAFTELKDWKERKGSTSAAEAMAAQA--AMESGVD 654 + ++VLG+ FSG+G NAA+ FT LKDW +R S S A+A+A +A A D Sbjct: 598 LKDPAVEHAIAVLGYSFSGNGQNAALVFTPLKDWSQRDKSQS-ADAIAGKAFGAFSQIKD 656 Query: 655 GMVMSLLPPAIEELGNSSGFAMRLQDRANQGYAALKAAEAQLLALAAKSGKLSGVYSDGL 714 +V L PP I ELGN++GF RLQDRA G+ AL A Q+L +A++S L+GV +GL Sbjct: 657 AIVFPLNPPPIPELGNATGFTFRLQDRAGLGHTALVQARNQILGMASQSKVLAGVRPEGL 716 Query: 715 PAGASVQLEIDRHKAAALGVSFSSISDTLSAAMGSFYVNDFPNAGRMQQVILQAQASARM 774 +QL+IDR KA ALGV FS+I+ LS A+GS YVNDFPN GR Q+VI+QA A R+ Sbjct: 717 EDAPQLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNLGRQQRVIVQADAKRRL 776 Query: 775 QLEDVMKLYVRNQSGGMVPLAELVKASWREAPTQLQRYQGFPAVRISGSAAPGVASGEAM 834 Q ED+ LY RN SG MVP + V A W P QL RY G+PA++I+G AAPG ++GEAM Sbjct: 777 QPEDLTNLYARNSSGTMVPFSAFVTAKWINGPVQLIRYNGYPAMKIAGGAAPGRSTGEAM 836 Query: 835 AEMERLAQQLPPGFAVAWTGQSLQERLSGGQ 865 AEME +LPPGF WTGQSL+E+ SG Q Sbjct: 837 AEMESFVAKLPPGFGFEWTGQSLEEKTSGNQ 867 >gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 817 bits (2110), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/870 (47%), Positives = 588/870 (67%), Gaps = 5/870 (0%) Query: 1 MPRFFIDRPIFAWVVALFIVLFGVIAMSQLPIARYPSVAPPTVSINATYPGATPQTMNDG 60 M RFFIDRPIFAWV+A+ I+L G++++ L + +YP +APP V+I ATY GA+ +T+ D Sbjct: 1 MARFFIDRPIFAWVIAIIIMLGGMMSIRSLSLEQYPDIAPPKVNIKATYTGASAKTLEDS 60 Query: 61 VISLIERELSGVKNLLYFESSADTSGTAQISVTFKPGTDPELAQVDVQNKLKAIEARLPQ 120 V +IE+++ G+ NL Y +S+ ++G+A +S+TF GT+P++AQ+ VQNKL+ + ARLPQ Sbjct: 61 VTQVIEQQMKGLDNLQYMSASSSSAGSATVSLTFTAGTNPDVAQMQVQNKLQQVTARLPQ 120 Query: 121 TVRQNGVTVESAASSFLLMVSLTSVDGRYDEVRLNDYLARNIVEELRRMEGVGRVQLFGA 180 V+ NGVTV A++ L+++SLTS D R + + D+++ + +++ R+EGVG V FG Sbjct: 121 AVQNNGVTVTKASTDILMVLSLTSDDPRITSIDIGDFISSTLTDQISRVEGVGDVTAFGT 180 Query: 181 EQAMRIWIDPFKLNAYGLTVTDISTAISQQNAQIAPGRLGDAPAVRGQQIAMPLTVQGQL 240 AMRIWIDP KL Y L +DI++A+ QN +++ G +G PA GQQI +T + +L Sbjct: 181 NYAMRIWIDPAKLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQINATITARSKL 240 Query: 241 QSPAQFAAIVLKAKADGSRVLLGDVARVELGAQSYAFANRENGKPAGVAAVQLSPGANAV 300 +P +F I++K+ DGS V L DVARVELG +SY A+++NGKP+ A+QL+ GANA+ Sbjct: 241 TTPDEFRNIIVKSSVDGSVVKLSDVARVELGGESYQVASQQNGKPSSALAIQLATGANAL 300 Query: 301 RTAAAIQARMEELRPSLPQGMAF--SLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLF 358 TA A++ ++ EL P P M ++ Y+T PFV++S+++VV+TLIEA+VLV L+MYLF Sbjct: 301 ATADAVKKKLAELEPYFPASMKLKTNIAYDTTPFVRVSLEEVVKTLIEAIVLVVLIMYLF 360 Query: 359 LQNVRYTVIPAIVAPIALLGTLAVMQLAGYSVNVLTMFGMVLAIGIIVDDAIVVVENVER 418 LQN+R T IPAI P+ LLGT ++ + GYS+N LTMFGMVLAIG++VDDAIVVVENVER Sbjct: 361 LQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 420 Query: 419 IMAHEGLGPREATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSVAMAVSI 478 +M+ E L P+EAT K+M EITGA++GI +VL+AVFIPMA GGS GVIYRQFS+ + ++ Sbjct: 421 LMSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSAM 480 Query: 479 LFSAFLALSLTPALCATLLRPVPAGHHDKRGFFGAFNRAFNRLTARYESALGRLIARGLR 538 S +AL+LTPALCATLL+P GH + FF FNR+F+R RY+ + L+ RG R Sbjct: 481 ALSVMVALTLTPALCATLLKPHAGGHVQQGRFFTWFNRSFDRSATRYQGGVAGLLKRGKR 540 Query: 539 MMLVYAALSGLLVVGMQALPSAFLPEEDQGYFMTSFQLPADATTERTARAVDQFERYLKG 598 +L+YA ++ + V LP++FLPEEDQG M QLP AT E+TA V + Y Sbjct: 541 GLLMYALIAVAMAVLFMRLPTSFLPEEDQGVLMAQIQLPTGATAEQTATVVKTVQEYFMN 600 Query: 599 R-EDIGANLSVLGFGFSGSGPNAAMAFTELKDWKERKGSTSAAEAMAAQAAME-SGVDGM 656 + E + + L+++G G G+ N A AF LKDW++R G+ +A + +A + S + G Sbjct: 601 KPESVESVLAIVGAGVGGNSQNGARAFIRLKDWEQRTGAGQSASELVRRANADLSKIRGA 660 Query: 657 VMSLL-PPAIEELGNSSGFAMRLQDRANQGYAALKAAEAQLLALAAKSGKLSGVYSDGLP 715 + L+ PPA+ LG SSGF + L+D G+ AL A Q L LA + L+ V + GL Sbjct: 661 RVFLMNPPAVRGLGQSSGFDLELKDVGGVGHDALLQARDQFLQLARSNALLANVRTTGLD 720 Query: 716 AGASVQLEIDRHKAAALGVSFSSISDTLSAAMGSFYVNDFPNAGRMQQVILQAQASARMQ 775 +++ ID KA AL ++ S I+ TL+ AMG YVNDF + GR+++V +Q ++ RMQ Sbjct: 721 DTPQLRVAIDDRKADALSIATSDINATLATAMGGTYVNDFLSNGRVKKVYVQGDSAFRMQ 780 Query: 776 LEDVMKLYVRNQSGGMVPLAELVKASWREAPTQLQRYQGFPAVRISGSAAPGVASGEAMA 835 +D+ + YVRN + MVP A + + W P+ L+RY G + I G A GV+SG AMA Sbjct: 781 ADDLNRWYVRNAASQMVPFAAFMSSQWTYGPSLLERYNGVSSFEIVGEPAAGVSSGTAMA 840 Query: 836 EMERLAQQLPPGFAVAWTGQSLQERLSGGQ 865 E+E+L QLP G WTG S QERLSG Q Sbjct: 841 EVEKLVAQLPAGIGFEWTGSSYQERLSGNQ 870 >gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1049 Score = 813 bits (2099), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/871 (48%), Positives = 578/871 (66%), Gaps = 6/871 (0%) Query: 1 MPRFFIDRPIFAWVVALFIVLFGVIAMSQLPIARYPSVAPPTVSINATYPGATPQTMNDG 60 M RFFIDRPIFAWV+A+ ++L G++++ LPIA+YP++APP ++I A YPGA+ +T+ D Sbjct: 1 MARFFIDRPIFAWVLAIIVMLAGIVSVLTLPIAQYPAIAPPAIAITANYPGASAKTLEDT 60 Query: 61 VISLIERELSGVKNLLYFESSADTSGTAQISVTFKPGTDPELAQVDVQNKLKAIEARLPQ 120 V +IE+++ G+ L Y S++++SG+ I++TF+ GT+P+ AQV VQNKL LP Sbjct: 61 VTQIIEQKMKGLDRLSYMASTSESSGSVTITLTFENGTNPDTAQVQVQNKLSLATPLLPS 120 Query: 121 TVRQNGVTVESAASSFLLMVSLTSVDGRYDEVRLNDYLARNIVEELRRMEGVGRVQLFGA 180 V+Q G+TV +A++FL +++ TS DG L+DY+A N+ + + R+EGVG LFG+ Sbjct: 121 EVQQQGITVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAISRVEGVGDTTLFGS 180 Query: 181 EQAMRIWIDPFKLNAYGLTVTDISTAISQQNAQIAPGRLGDAPAVRGQQIAMPLTVQGQL 240 + AMRIW+DP KLN+YGLT D+ AI QNAQ++ G+LG PA QQI +T Q +L Sbjct: 181 QYAMRIWLDPNKLNSYGLTPLDVKNAIQAQNAQVSSGQLGGLPAAENQQINATITAQTRL 240 Query: 241 QSPAQFAAIVLKAKADGSRVLLGDVARVELGAQSYAFANRENGKPAGVAAVQLSPGANAV 300 ++ QF IVL+ G++V L DVAR+ELG++SY R NGKPA A++L+ GANA+ Sbjct: 241 RTADQFQNIVLRTLTGGAQVKLRDVARIELGSESYTSVGRYNGKPAAGLAIKLATGANAL 300 Query: 301 RTAAAIQARMEELRPSLPQGMAFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQ 360 T AI R+ EL P GM PY+T PFV+ISI++VV+TLIEA+VLVFLVMYLFLQ Sbjct: 301 DTVKAIDKRVAELEKFFPTGMKVQKPYDTTPFVRISIEEVVRTLIEAVVLVFLVMYLFLQ 360 Query: 361 NVRYTVIPAIVAPIALLGTLAVMQLAGYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIM 420 N R T+IP I P+ LLGT V+ + G+++N LTMF MVLAIG++VDDAIVVVENVER+M Sbjct: 361 NFRATLIPTIAVPVVLLGTFGVLAVFGFTINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 AHEGLGPREATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSVAMAVSILF 480 + EGL P++AT K+MG+I+GA++G+ LVL AVF+PMA GS GVIYRQFS+ + ++ Sbjct: 421 SEEGLPPKQATRKSMGQISGALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTL 480 Query: 481 SAFLALSLTPALCATLLRPVPAGHH-DKRGFFGAFNRAFNRLTARYESALGRLIARGLRM 539 S +AL LTPALCATLL+P GH GFFG FNR F+R RY+ + ++ RG R Sbjct: 481 SVLVALVLTPALCATLLKPAAKGHALATTGFFGWFNRQFDRSNIRYQGIVRHMLGRGWRY 540 Query: 540 MLVYAALSGLLVVGMQALPSAFLPEEDQGYFMTSFQLPADATTERTARAVDQFERY--LK 597 M YA L L+V G LP FLP+EDQG QLP+ AT RT + Q E++ + Sbjct: 541 MAAYAVLLALVVAGFMKLPVGFLPDEDQGTLFAIMQLPSGATKARTDEVIRQVEQHFLVD 600 Query: 598 GREDIGANLSVLGFGFSGSGPNAAMAFTELKDWKERKG-STSAAEAMAAQAAMESGV-DG 655 +E + +V GF F+GSG N AF +LK W ERKG S + A A + + D Sbjct: 601 QKEAVSGVFAVSGFSFAGSGQNMGFAFIKLKPWDERKGPGLSVTDVAAKAGAAFANIRDA 660 Query: 656 MVMSLLPPAIEELGNSSGFAMRLQDRANQGYAALKAAEAQLLALAAKSGKLSGVYSDGLP 715 V + PPA+ ELGN++GF + L+D AN G+AAL A QLL + +L V +GL Sbjct: 661 RVFAFAPPAVSELGNATGFDLMLKDEANLGHAALMQARNQLLGELMQDKRLVAVRPNGLE 720 Query: 716 AGASVQLEIDRHKAAALGVSFSSISDTLSAAMGSFYVNDFPNAGRMQQVILQAQASARMQ 775 +L +D KA ALGV+ S I+DT++ A GS YVNDF + GR+++V+LQ A RM Sbjct: 721 DTPEFRLSVDTDKAGALGVAMSDINDTIATAWGSSYVNDFIDKGRVKKVMLQGDAQYRML 780 Query: 776 LEDVMKLYVRNQSGGMVPLAELVKASWREAPTQLQRYQGFPAVRISGSAAPGVA-SGEAM 834 DV + YVRN +G MVP + ASW +L+RY G P++ I G A PG A SGEAM Sbjct: 781 PSDVDRWYVRNSAGTMVPFSAFSTASWTSGSPRLERYNGVPSMEILGMALPGAASSGEAM 840 Query: 835 AEMERLAQQLPPGFAVAWTGQSLQERLSGGQ 865 A +E ++PPG WTG SLQE+ S G+ Sbjct: 841 AIVEAALAKMPPGIGYEWTGLSLQEKASSGK 871 >gi|300309657|ref|YP_003773749.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1071 Score = 495 bits (1274), Expect = e-141, Method: Compositional matrix adjust. Identities = 335/882 (37%), Positives = 508/882 (57%), Gaps = 29/882 (3%) Query: 3 RFFIDRPIFAWVVALFIVLFGVIAMSQLPIARYPSVAPPTVSINATYPGATPQTMNDGVI 62 +FFIDRPIFA V+++ ++L GV+AM QLPI+ YP V PP+V + A YPGA P+ + + V Sbjct: 5 KFFIDRPIFAGVLSVLLLLGGVLAMLQLPISEYPEVVPPSVVVRAQYPGANPKVIAETVA 64 Query: 63 SLIERELSGVKNLLYFESSADTSGTAQISVTFKPGTDPELAQVDVQNKLKAIEARLPQTV 122 S +E +++GV+N+LY +S A++ G I+V F+ G DP+ AQ VQN++ RLP+ V Sbjct: 65 SPLEEQINGVENMLYMQSQANSDGNLTITVNFRLGVDPDKAQQLVQNRVSQALPRLPEDV 124 Query: 123 RQNGVTVESAASSFLLMVSLTSVDGRYDEVRLNDYLARNIVEELRRMEGVGRVQLFGA-E 181 ++ GVT ++ + ++V LTS D RYD L +Y N+ + L R++GVG V LFG+ Sbjct: 125 QRLGVTTLKSSPTLTMVVHLTSPDNRYDTTYLRNYAVLNVKDRLARIQGVGEVGLFGSGN 184 Query: 182 QAMRIWIDPFKLNAYGLTVTDISTAISQQNAQIAPGRLGDAPAVRGQQIAMPLTVQGQLQ 241 AMR+W+DP K+ GLT TD+ AI +QN Q+A G +G +P+ + + + QG+L+ Sbjct: 185 YAMRVWLDPNKVAQRGLTATDVVRAIREQNVQVAAGVIGASPSSPETPLQLSVNAQGRLK 244 Query: 242 SPAQFAAIVLKAKADGSRVLLGDVARVELGAQSYAFANRENGKPAGVAAVQLSPGANAVR 301 + +F I+LKA DG+ LGDVARVEL A Y + + KPA + +PGANA+ Sbjct: 245 TEGEFRDIILKASPDGATTRLGDVARVELAASEYGLRSLLDNKPAVAIPIFQAPGANALD 304 Query: 302 TAAAIQARMEELRPSLPQGMAFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQN 361 + ++A M+EL P +++S+ Y+ FV+ SI+ VV TL+EA+ LV +V+ +FLQ Sbjct: 305 VSTQVRAAMKELSADFPSSVSYSIVYDPTQFVRASIEAVVHTLLEAIALVVIVVIIFLQT 364 Query: 362 VRYTVIPAIVAPIALLGTLAVMQLAGYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIMA 421 R ++IP + P++++GT ++M GY++N L++FGMVLAIGI+VDDAIVVVENVER + Sbjct: 365 WRASIIPLLAVPVSIIGTFSLMLGFGYTINALSLFGMVLAIGIVVDDAIVVVENVERNIG 424 Query: 422 HEGLGPREATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSVAMAVSILFS 481 GL PR+AT +AM E++G II I L L AVF+P+A G G Y+QF++ +A+S + S Sbjct: 425 -AGLSPRDATYRAMQEVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAISTVIS 483 Query: 482 AFLALSLTPALCATLLRPVPAGHHDKRGFFGAFNRAFNRL---------------TARYE 526 AF +L+L+PAL A LL+ GH DK + R +R + Y Sbjct: 484 AFNSLTLSPALAALLLK----GHGDKPDW---LTRQMDRFLGGFFIRFNRFFNRASDNYG 536 Query: 527 SALGRLIARGLRMMLVYAALSGLLVVGMQALPSAFLPEEDQGYFMTSFQLPADATTERTA 586 + +I R M VY L + +P F+P +D+ Y + QLP A+ +R+ Sbjct: 537 HGVTGVIKRKGATMGVYVLLLAATLGISYIVPGGFVPGQDKQYLVAFAQLPNGASIDRSE 596 Query: 587 RAVDQFERYLKGREDIGANLSVLGFGFSG--SGPNAAMAFTELKDWKERKGSTSAAEAMA 644 + + + + + ++ G +G + +A + F LK ++ERK + A+A Sbjct: 597 EVMRKMSDIMLKEPGVASAIAFPGLSINGFTNSSSAGIVFVGLKPFEERKSKDLSGNAIA 656 Query: 645 AQAAMESGV--DGMVMSLLPPAIEELGNSSGFAMRLQDRANQGYAALKAAEAQLLALAAK 702 A + G + PP + LG GF M+++DR GYA L A + AAK Sbjct: 657 ASLNKKFGSIKEAFTAVFPPPPVMGLGTLGGFKMQIEDRDALGYAELDKAAQAFMKAAAK 716 Query: 703 SGKLSGVYSDGLPAGASVQLEIDRHKAAALGVSFSSISDTLSAAMGSFYVNDFPNAGRMQ 762 L ++S + +E+DR KA LG+ + + +T+ +GS YVNDF GR+ Sbjct: 717 EPALGPMFSSYQINVPQLDVELDRVKAKQLGIPVTDVFNTMQIYLGSLYVNDFNRFGRVY 776 Query: 763 QVILQAQASARMQLEDVMKLYVRNQSGGMVPLAELVKASWREAPTQLQRYQGFPAVRISG 822 QV QA A R + ED+ +L RN +G MVPL+ +VK P + RY G+ A I+G Sbjct: 777 QVRAQADAPFRAKAEDIAQLKTRNDAGEMVPLSSVVKVKQTFGPEMVVRYNGYTAADING 836 Query: 823 SAAPGVASGE-AMAEMERLAQQLPPGFAVAWTGQSLQERLSG 863 APG +S + A A LP G WT + Q+ L+G Sbjct: 837 GPAPGYSSDQAQAAAERVAAATLPRGIKFEWTDLTYQKILAG 878 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.134 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,744,950 Number of extensions: 112353 Number of successful extensions: 537 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 481 Number of HSP's successfully gapped: 19 Length of query: 943 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 849 Effective length of database: 1,174,780 Effective search space: 997388220 Effective search space used: 997388220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 135 (56.6 bits)