BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0005.p (246 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313245|ref|YP_003777337.1| two component response regulato... 372 e-104 gi|300311273|ref|YP_003775365.1| two component response regulato... 126 2e-30 gi|300313896|ref|YP_003777988.1| two component transcription res... 119 2e-28 gi|300312356|ref|YP_003776448.1| cobalt/zinc/cadmium resistance ... 108 3e-25 gi|300310718|ref|YP_003774810.1| phosphate regulon two-component... 98 6e-22 >gi|300313245|ref|YP_003777337.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 372 bits (956), Expect = e-104, Method: Compositional matrix adjust. Identities = 191/203 (94%), Positives = 192/203 (94%), Gaps = 4/203 (1%) Query: 1 MHTGEPAPTTAPPAAGALILIAEDAPEIAEILAAYLARNGMRSVHAADGARALELHLALK 60 MHTGEPAPTTAPPAAGALILIAEDAPEIAEILAAYLARNGMRSVHAADGARALELHLALK Sbjct: 22 MHTGEPAPTTAPPAAGALILIAEDAPEIAEILAAYLARNGMRSVHAADGARALELHLALK 81 Query: 61 PDLVLLDIQMPQVNGWQVLSQIRQRDNTPVILLTALDQDVDKLTGLRIGADDYVVKPFNP 120 PDLVLLDIQMPQVNGWQVLSQIRQRDNTPVILLTALDQDVDKLTGLRIGADDYVVKPFNP Sbjct: 82 PDLVLLDIQMPQVNGWQVLSQIRQRDNTPVILLTALDQDVDKLTGLRIGADDYVVKPFNP 141 Query: 121 AEVVARVEAVLRRSLPREERDDRQVLRVPPFVIDFEQHEVVAEIEGVSHTLVLTLTEFKL 180 AEVVARVEAVLRRSLPREERDDRQVLRVPPFVIDFEQHEVVAEIEGVSHTLVLTLTEFKL Sbjct: 142 AEVVARVEAVLRRSLPREERDDRQVLRVPPFVIDFEQHEVVAEIEGVSHTLVLTLTEFKL 201 Query: 181 LAQL-RARPAACSAAQ---SCWP 199 LAQL RA S A+ SC P Sbjct: 202 LAQLARAPRRVFSRAELLASCLP 224 >gi|300311273|ref|YP_003775365.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 126 bits (316), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/188 (42%), Positives = 110/188 (58%), Gaps = 1/188 (0%) Query: 19 ILIAEDAPEIAEILAAYLARNGMRSVHAADGARALELHLALKPDLVLLDIQMPQVNGWQV 78 ILI ED + A+IL AYL R G ++ AADG +ALEL+ +PDLVLLD+ +P ++G +V Sbjct: 6 ILIVEDDLDGADILDAYLNREGFQTRQAADGHQALELYRRWRPDLVLLDVMLPGLSGNEV 65 Query: 79 LSQIRQRDNTPVILLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVARVEAVLRRSL-PR 137 L+ IRQ +T VI++TA+ + L GADDYVVKP++P EVVARV AVLRR L P Sbjct: 66 LAAIRQHASTAVIMVTAVADQPRLINSLLYGADDYVVKPYHPGEVVARVHAVLRRMLRPV 125 Query: 138 EERDDRQVLRVPPFVIDFEQHEVVAEIEGVSHTLVLTLTEFKLLAQLRARPAACSAAQSC 197 + VLR +D + + +G L LT TE LLA + A P + Sbjct: 126 SGAAQQAVLRHGALTLDPDAALATVDKDGHPQALTLTRTELNLLALMMAAPTRMFSRAEL 185 Query: 198 WPPACPKA 205 + P++ Sbjct: 186 LAHSQPES 193 >gi|300313896|ref|YP_003777988.1| two component transcription response regulator protein [Herbaspirillum seropedicae SmR1] Length = 244 Score = 119 bits (298), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 65/132 (49%), Positives = 93/132 (70%), Gaps = 6/132 (4%) Query: 8 PTT----APPAAGALILIAEDAPEIAEILAAYLARNGMRSVHAADGARALELHLALKPDL 63 PTT APPA+ A ILI ED P++AE+L YLA G + H A G AL+ A +PDL Sbjct: 4 PTTEFQFAPPAS-ADILIVEDEPKLAELLQKYLALAGYSARHVARGDAALDAVRAQRPDL 62 Query: 64 VLLDIQMPQVNGWQVLSQIRQRDNTPVILLTALDQDVDKLTGLRIGADDYVVK-PFNPAE 122 +LLDI +P ++GW++ Q+R + PV++LTA ++ D+L GL +GADDY+ K PF+P E Sbjct: 63 ILLDIMLPGMDGWEICRQLRTFSDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPRE 122 Query: 123 VVARVEAVLRRS 134 +VARV+++LRR+ Sbjct: 123 IVARVKSMLRRN 134 >gi|300312356|ref|YP_003776448.1| cobalt/zinc/cadmium resistance two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 223 Score = 108 bits (271), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 65/171 (38%), Positives = 99/171 (57%), Gaps = 8/171 (4%) Query: 19 ILIAEDAPEIAEILAAYLARNGMRSVHAADGARALELHLALKPDLVLLDIQMPQVNGWQV 78 IL+ ED P+ + L L +G A +GA L + L DLV+LD+ +P ++GWQV Sbjct: 3 ILVIEDDPKTGDYLRKGLRESGYAVDLARNGADGLHMALEQDYDLVVLDVMLPGLDGWQV 62 Query: 79 LSQIRQRDNTPVILLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVARVEAVLRRSLPRE 138 +S +R + + PV+ LTA D D++ GL++GADDY+VKPF+ E+V R+ +LRR + RE Sbjct: 63 MSALRSKRDLPVLFLTARDHVDDRIRGLQLGADDYLVKPFSFTELVLRIRTLLRRGVTRE 122 Query: 139 ERDDRQVLRVPPFVIDFEQHEVVAEIEGVSHTLVLTLTEFKLLAQLRARPA 189 +V + +D +H+V +GV+ + LT EF LL L R Sbjct: 123 A----EVYEIADLQLDHVRHKVTR--QGVN--IALTNKEFMLLHLLIKRQG 165 >gi|300310718|ref|YP_003774810.1| phosphate regulon two-component response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 230 Score = 97.8 bits (242), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 71/174 (40%), Positives = 98/174 (56%), Gaps = 12/174 (6%) Query: 19 ILIAEDAPEIAEILAAYLARNGMRSVHAADGARALELHLALK-PDLVLLDIQMPQVNGWQ 77 IL+ ED P IAE+L + G + A D A+A + H+A P +VLLD +P +G Sbjct: 8 ILMVEDEPSIAELLRFTMQGAGFATTIATDVAQARK-HIAESLPHVVLLDWMLPDSSGLV 66 Query: 78 VLSQIRQRDNT---PVILLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVARVEAVLRRS 134 +L+++R+ T PVI+LTA + DK+ GL GADDYV KPF+P E+VARV+A+LRR Sbjct: 67 LLNELRRDQRTASLPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRK 126 Query: 135 LPREERDDRQVLRVPPFVIDFEQHEVVAEIEGVSHTLVLTLTEFKLLAQLRARP 188 P Q L+ ID E+ +V ++L EFKLL L A P Sbjct: 127 AP---EIGSQALKYRDISIDVERRQVSV----ADKPVLLDQAEFKLLRYLVAHP 173 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.132 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 611,067 Number of extensions: 21949 Number of successful extensions: 227 Number of sequences better than 1.0e-08: 39 Number of HSP's gapped: 228 Number of HSP's successfully gapped: 39 Length of query: 246 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 163 Effective length of database: 1,226,865 Effective search space: 199978995 Effective search space used: 199978995 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)