BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0004.p (361 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313246|ref|YP_003777338.1| two component transmembrane sen... 614 e-177 gi|300313895|ref|YP_003777987.1| two-component system sensor his... 115 8e-27 gi|300311272|ref|YP_003775364.1| two component sensor histidine ... 97 2e-21 gi|300309362|ref|YP_003773454.1| transmembrane sensory transduct... 91 2e-19 gi|300312357|ref|YP_003776449.1| cobalt/zinc/cadmium resistance ... 64 1e-11 >gi|300313246|ref|YP_003777338.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 614 bits (1584), Expect = e-177, Method: Compositional matrix adjust. Identities = 317/328 (96%), Positives = 320/328 (97%) Query: 1 VKHGTFFSIWRSKGLARQIVTAVVVLAVAIMLMVLLGSYAFYSTMFIFFPTAMSAPDSWL 60 +KHGTFFSIWRSKGLARQIVTAVVVLAVAIMLMVLLGSYAFYSTMFIFFPTAMSAPDSWL Sbjct: 1 MKHGTFFSIWRSKGLARQIVTAVVVLAVAIMLMVLLGSYAFYSTMFIFFPTAMSAPDSWL 60 Query: 61 PSPVEWGWILATTLIGLSIALWVAVRLSRRILTPLNSVATSLRRVAQGDLSARAAAERQP 120 PSPVEWGWIL TTLIGLSIALWVAVRLSRRILTPLNSVATSLRRVAQGDLSARAAAERQP Sbjct: 61 PSPVEWGWILVTTLIGLSIALWVAVRLSRRILTPLNSVATSLRRVAQGDLSARAAAERQP 120 Query: 121 LDEAWQLINDFNAMAERLERVQQERIFWNAAIAHELRTPVTILRGRLQGLSDGVFQPEPA 180 LDEAWQLINDFNAMAERLERVQQERIFWNAAIAHELRTPVTILRGRLQGLSDGVFQPEPA Sbjct: 121 LDEAWQLINDFNAMAERLERVQQERIFWNAAIAHELRTPVTILRGRLQGLSDGVFQPEPA 180 Query: 181 LFSSLLAQVEGLGRLIEDLRIVGLAESGHLRVQLQETDLQADIMTVLKACEPALQEKGFR 240 LFSSLLAQVEGLGRLIEDLRIVGLAESGHLRVQLQETDLQADIMTVLKACEPALQEKGFR Sbjct: 181 LFSSLLAQVEGLGRLIEDLRIVGLAESGHLRVQLQETDLQADIMTVLKACEPALQEKGFR 240 Query: 241 LLLETGVQRSRCDPVRIRQALLALLENVLQHASPGPLRISTRSLAGMHSLCVEDSGPGIA 300 LLLETGVQRSRCDPVRIRQALLALLENVLQHASPGPLRISTRSLAGMHSLCVEDSGPGIA Sbjct: 241 LLLETGVQRSRCDPVRIRQALLALLENVLQHASPGPLRISTRSLAGMHSLCVEDSGPGIA 300 Query: 301 ASDAQMIFDAFHRGARAATPSRKAAAWG 328 ASDAQMIFDAFHRGARA +K + G Sbjct: 301 ASDAQMIFDAFHRGARAGDAQQKGSGLG 328 >gi|300313895|ref|YP_003777987.1| two-component system sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 475 Score = 115 bits (287), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 82/261 (31%), Positives = 125/261 (47%), Gaps = 4/261 (1%) Query: 74 LIGLSIALWVAVRLSRRILTPLNSVATSLRRVAQGDLSARAAAERQPLDEAWQLINDFNA 133 ++ + +A ++ VR+S + PL VA + R+A GD + R E DE L DFN Sbjct: 179 VVAVMLAAFLVVRISGVLTRPLTRVARATHRLASGDYAIRVEVESG--DEVGMLAQDFNQ 236 Query: 134 MAERLERVQQERIFWNAAIAHELRTPVTILRGRLQGLSDGVFQPEPALFSSLLAQVEGLG 193 +A LER ++ R + A ++HELRTP+ IL G+L+ L DGV QP+ SL ++VE L Sbjct: 237 LAMTLERNEKLRREFMADVSHELRTPLAILNGQLEALEDGVLQPDAQTLRSLKSEVEHLN 296 Query: 194 RLIEDLRIVGLAESGHLRVQLQETDLQADIMTVLKACEPALQEKGFRLLLETGVQRS-RC 252 +L+ DL + LA++G L + + DL + ++G RL E Sbjct: 297 KLVGDLYDLSLADAGALTYRRADIDLAPLLRDSAALYSDRFSQRGMRLSCELPASMPVHG 356 Query: 253 DPVRIRQALLALLENVLQHASPGPLRISTRSLAGMH-SLCVEDSGPGIAASDAQMIFDAF 311 D R++Q L L EN L++ G L H L +DS PG+ +F+ F Sbjct: 357 DAARLQQLLSNLFENSLRYTDAGGRLQVHAHLQQQHWHLVFDDSEPGVPPEVMARLFERF 416 Query: 312 HRGARAATPSRKAAAWGWPWC 332 R + + A G C Sbjct: 417 FRVEASRNRASGGAGLGLAIC 437 >gi|300311272|ref|YP_003775364.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 401 Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 95/269 (35%), Positives = 137/269 (50%), Gaps = 16/269 (5%) Query: 68 WILATTLIGLSIALWVAVRLSRRILTPLNSVATSLRRVAQGDLSARAAAERQPLDEAWQL 127 W LI L + + + LS R+ L++VA + RR+A GD SARA + +Q L Sbjct: 98 WFSLLVLIALPLIVGAGLMLSLRLSRHLDAVAVAARRLAAGDFSARALSCKQVPAALDAL 157 Query: 128 INDFNAMAERLERVQQERIFWNAAIAHELRTPVTILRGRLQGLSDGVFQPEPALFSSLLA 187 + D N MAERLER ++E +AAIAHELRTP+T + RLQG+ DG+F P S ++ Sbjct: 158 MRDVNEMAERLERRERELHASSAAIAHELRTPLTAAKARLQGIMDGIFDRSPQQLSMIMR 217 Query: 188 QVEGLGRLIEDLRIVGLAESGHLRVQLQETDLQADIMTVLKACEPALQEKGFRLLLETGV 247 Q++ L RLI DL ++ L +G L + + L+ + L P+L+ LL Sbjct: 218 QLDQLNRLISDLYLLSLVSAGQLALVRSQFQLRPLLEERLAWAAPSLR------LLPMST 271 Query: 248 QRSRC-------DPVRIRQALLALLENVLQHASPGP-LRISTRSLAGMHSLCVEDSGPGI 299 C D R+ QA+ L++N L++A+ G L IS G + VED GPG Sbjct: 272 ALYCCEHLPLNADRDRLGQAISILIDNALRYAASGKLLTISAGLHDGQIHIDVEDDGPGF 331 Query: 300 AASDAQMIFDAFHRGARAATPSRKAAAWG 328 A ++ D F R + SR A G Sbjct: 332 APEHLELACDRFWRAEH--SRSRHAGGSG 358 >gi|300309362|ref|YP_003773454.1| transmembrane sensory transduction histidine kinase for cobalt/zinc/ cadmium resistance transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 467 Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 129/252 (51%), Gaps = 11/252 (4%) Query: 75 IGLSIALWVAVRLSRRILTPLNSVATSLRRVAQGDLSARAAAERQPLDEAWQLINDFNAM 134 +G +A+ ++ L R L PL ++A R V+ L R + P E +++ FN M Sbjct: 176 VGALLAILMSYFLVRSGLRPLRTMAAQTRAVSANRLDTRLDLQAAP-RELHEIVESFNEM 234 Query: 135 AERLERVQQERIFWNAAIAHELRTPVTILRGRLQ---GLSDGVFQPEPALFSSLLAQVEG 191 +RL R Q+ ++A +AH++RTP+ L + Q G G+ + + AL SS + + E Sbjct: 235 LDRLHRSFQQLSQFSADLAHDVRTPLNNLMVQTQVALGKPRGIDEYQ-ALLSSNIEEYER 293 Query: 192 LGRLIEDLRIVGLAESGHLRVQLQETDLQADIMTVLKACEPALQEKGFRLLLETGVQRSR 251 L R++E + + AE+ H+ +Q QE D+ ++ + E E RL+++ G R + Sbjct: 294 LSRMMESMLFLARAENAHVVLQWQELDVAQELTRIADYFEGIADEAQVRLVVQ-GAGRLQ 352 Query: 252 CDPVRIRQALLALLENVLQHA-SPGPLRISTRSLAGMHSLCVEDSGPGIAASDAQMIFDA 310 D +R+A+ L+ N +++ + G +R+ + + V + G GI A + +FD Sbjct: 353 ADATLLRRAVGNLVANAIRYTPADGVIRLQVDAAGDGMEISVSNPGAGIPAEQLERLFDR 412 Query: 311 FHRGARAATPSR 322 F+R A PSR Sbjct: 413 FYR----ADPSR 420 >gi|300312357|ref|YP_003776449.1| cobalt/zinc/cadmium resistance two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 475 Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/238 (23%), Positives = 110/238 (46%), Gaps = 5/238 (2%) Query: 94 PLNSVATSLRRVAQGDLSARAAAERQPLDEAWQLINDFNAMAERLERVQQERIFWNAAIA 153 PL +++ ++ LSAR E P E ++ FNAM +RLE ++ +A Sbjct: 201 PLEAMSQRAAQITPDHLSARLDQEGMPA-ELRRVALSFNAMLDRLEAGYAHLAQFSGDLA 259 Query: 154 HELRTPVTILRGRLQGLSDGVFQPE--PALFSSLLAQVEGLGRLIEDLRIVGLAESGHLR 211 HE+RTP+ +L G+ Q PE + S + +++ L R++E++ + A+ L Sbjct: 260 HEIRTPINVLMGQSQVALGQRRSPEEYEQVLESNVEELQRLSRIVENILFLAQADHAALA 319 Query: 212 VQLQETDLQADIMTVLKACEPALQEKGFRLLLETGVQRSRCDPVRIRQALLALLENVLQH 271 V+ DL ++ + E E+G R ++ Q + + + R+ + L+ N +++ Sbjct: 320 VERNALDLAEELGRITDYFEGIADERGMRFDVQAAGQ-CQANLIMWRRVVSNLVINAVRY 378 Query: 272 A-SPGPLRISTRSLAGMHSLCVEDSGPGIAASDAQMIFDAFHRGARAATPSRKAAAWG 328 + +RI S + VE+ + A +FD F+RG R+ + ++ G Sbjct: 379 GRAESTIRILAESDGEGSRIMVENRSEDVTAQAMARMFDRFYRGDRSRSAFTESNGLG 436 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.135 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,098,501 Number of extensions: 43122 Number of successful extensions: 337 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 335 Number of HSP's successfully gapped: 18 Length of query: 361 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 275 Effective length of database: 1,212,660 Effective search space: 333481500 Effective search space used: 333481500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)