BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0176.p
         (345 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309808|ref|YP_003773900.1| aspartate carbamoyltransferase ...   119   3e-28
gi|300310761|ref|YP_003774853.1| ornithine carbamoyltransferase ...    63   3e-11

>gi|300309808|ref|YP_003773900.1| aspartate carbamoyltransferase
           catalytic subunit [Herbaspirillum seropedicae SmR1]
          Length = 319

 Score =  119 bits (299), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 145/295 (49%), Gaps = 32/295 (10%)

Query: 29  RKVSRV--LEGAVLANLFFEASTRTRLSFASAFMCLGGSVCDTTGFTYSSMAKGESIGDT 86
           R+V +V  + G  + NLFFE STRTR +F  A   L   V +      SS +KGES+ DT
Sbjct: 42  REVKKVPLMRGKSVFNLFFENSTRTRTTFEIASKRLSADVINLN-IQASSTSKGESLLDT 100

Query: 87  SRTVSG-YADVLVVRHPEQGSVAQFAS------ATHVPVINGGDGAGEHPTQALIDLYTI 139
              ++  +AD+ VVRH + G+    A        +HV V+N GDG   HPTQ L+D+YTI
Sbjct: 101 IDNLAAMHADMFVVRHAQSGAPFLIAKHLIDTKQSHVHVVNAGDGRHAHPTQGLLDMYTI 160

Query: 140 ---QREFSRLGKLIDGSHIVITGDLKYGRTAHSLVQLLSLYRRMRFTLVSPPSLEMPEEI 196
              +++F+ L        + I GD+ + R A S +  L+         + P +L +P  +
Sbjct: 161 RHYKKDFTNL-------RVAIVGDILHSRVARSDIHALTTLGVPEVRAIGPRTL-LPSGL 212

Query: 197 MQLIALRGHDVEVSGSLERALQGADVIYTTRIQRERLTGETIDSFLSIFEINKKVVNQ-- 254
            Q+       V V  ++E  L+  DVI   R+Q ER++G  + S    F+       +  
Sbjct: 213 EQM------GVRVFHNMEEGLKDVDVIIMLRLQNERMSGALLPSAQEFFKSYGLTPERLA 266

Query: 255 YCKNDVIVMHPLPRDSRPGAYDLNIDLDGDARLAIFRQTDNGVPIRMAIFATILG 309
             K D IVMHP P +      +++  +   A+  I  Q   G+ +RMA+ + + G
Sbjct: 267 LAKPDAIVMHPGPMNR---GVEIDSAVADGAQAVILPQVTFGIAVRMAVMSIVAG 318


>gi|300310761|ref|YP_003774853.1| ornithine carbamoyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score = 63.2 bits (152), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 3/150 (2%)

Query: 2   LSVAQFSRESGERLFALADIMQPIARRRKVSRVLEGAVLANLFFEASTRTRLSFASAFMC 61
           L  + F+ +  E +   + +++   +  +    L    L  +F + STRTRLSF +    
Sbjct: 7   LQFSDFTLDEYEYVIERSRVIKRKFKNYEPHHTLADRTLVMVFEKNSTRTRLSFEAGMHQ 66

Query: 62  LGGSVCDTTGFTYSSMAKGESIGDTSRTVSGYADVLVVRHPEQGSVAQFASATHVPVING 121
           +GG+         S + +GE + D ++ +S   DV+++R   Q  + +FA  + VPVING
Sbjct: 67  MGGAAI-YLNTRDSQLGRGEPVEDAAQVMSRMCDVIMIRTYGQEIIERFAKHSRVPVING 125

Query: 122 GDGAGEHPTQALIDLYT-IQREFSRLGKLI 150
                +HP Q L D++T I+   S  GK++
Sbjct: 126 LTNE-QHPCQVLADVFTYIEHHGSIQGKIV 154


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,068,462
Number of extensions: 44818
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 2
Length of query: 345
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 259
Effective length of database: 1,212,660
Effective search space: 314078940
Effective search space used: 314078940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)