BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0164.p
         (413 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313940|ref|YP_003778032.1| transcription factor jumonji, J...    69   6e-13

>gi|300313940|ref|YP_003778032.1| transcription factor jumonji, JmjC
           protein [Herbaspirillum seropedicae SmR1]
          Length = 296

 Score = 69.3 bits (168), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 51/100 (51%)

Query: 295 GVITKLHRDFQISFLAQIWGEKKLQLFSPDQSDELYAAPAFNMYQLCGIDPGAPDFLRYP 354
           G IT LH D+  +  AQ+WG K++ L  P     LY   A  +      DP  PD  R+P
Sbjct: 187 GCITPLHCDYDDNVFAQVWGSKRVWLAPPHHDQYLYPKEANAILFGSPFDPDHPDLERFP 246

Query: 355 RFNTARPLEVIIGPGDILMIPTGWFHCVWALTDVFSVNRF 394
               A  +   + PG++L IP GW+H V +LT   S NR+
Sbjct: 247 LARQAALVCCEVQPGEMLYIPAGWYHQVSSLTFSLSSNRW 286


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.140    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,306,751
Number of extensions: 54915
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 325
Effective length of database: 1,203,190
Effective search space: 391036750
Effective search space used: 391036750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 132 (55.5 bits)