BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0151.p (292 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310521|ref|YP_003774613.1| branched-chain amino acid ABC t... 99 5e-22 gi|300309519|ref|YP_003773611.1| branched-chain amino acid ABC t... 99 5e-22 gi|300311880|ref|YP_003775972.1| amino acid ABC transporter perm... 93 3e-20 gi|300314070|ref|YP_003778162.1| branched-chain amino acid ABC t... 92 6e-20 gi|300311114|ref|YP_003775206.1| branched-chain amino acid ABC t... 90 2e-19 >gi|300310521|ref|YP_003774613.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 309 Score = 98.6 bits (244), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 84/311 (27%), Positives = 147/311 (47%), Gaps = 39/311 (12%) Query: 4 WIDTLVQGLMLGGLYALFAMGQSLMFGVMRLTNTAHGDFLILAAFAAFSLLSAFGLHGVG 63 +I ++ GL+LG +YAL A+G ++++GV+ L N AHGD L++ A SLL G Sbjct: 4 FIQQIINGLVLGSMYALIALGYTMVYGVLNLINFAHGDILMVGAMVGLSLLKVVQQVAPG 63 Query: 64 ATAAIQLAL-----LPLAFVFGYGLQRLVLNGTLGKDPLPSLVVSFGLSIVIQNMLTEVF 118 +QL + +P+ V ++R+ L L+ + G+SI++Q + ++ Sbjct: 64 LPGIVQLVIAIVGAIPVCIVVSLLIERIAYRPLRNAPRLAPLITAIGVSILLQTLAMMIW 123 Query: 119 TSDPRAIDTGELNMQSLSLGDHLSVG---ILPLSIFIIAILVVA--AMQWLFGRTALGRA 173 P L + D + + I P I ++A+ V+A + + +T +GRA Sbjct: 124 GRSP-------LPFPQVMPSDPVHIAGALISPTQIMLLALAVLAMVGLVLIVEKTKMGRA 176 Query: 174 FRATSDDKEAAQLMGLDARRVYGLA-------TGLAFVLVAIAGTLQGMRTTFSPTDGPA 226 RAT+++ A LMG+DA +V + +A V+ A + F P Sbjct: 177 MRATAENPRIAGLMGVDANKVIVVTFAIGAGLAAIAGVMWAANYSTAQFAMGFVPG---- 232 Query: 227 LLLLAFESVIIGGLGSFWGTFAGALILGATQSIGFR---------LDPGWGIWFGHIVFL 277 L AF + ++GG+G+ +G G ++LG +S+G L + F IV + Sbjct: 233 --LKAFSAAVLGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGNFLGSNYQDIFAFIVLI 290 Query: 278 LMLALRPQGLF 288 ++L LRP G+ Sbjct: 291 IVLTLRPSGIM 301 >gi|300309519|ref|YP_003773611.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 309 Score = 98.6 bits (244), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 84/311 (27%), Positives = 147/311 (47%), Gaps = 39/311 (12%) Query: 4 WIDTLVQGLMLGGLYALFAMGQSLMFGVMRLTNTAHGDFLILAAFAAFSLLSAFGLHGVG 63 +I ++ GL+LG +YAL A+G ++++GV+ L N AHGD L++ A SLL G Sbjct: 4 FIQQIINGLVLGSMYALIALGYTMVYGVLNLINFAHGDILMVGAMVGLSLLKVVQQVAPG 63 Query: 64 ATAAIQLAL-----LPLAFVFGYGLQRLVLNGTLGKDPLPSLVVSFGLSIVIQNMLTEVF 118 +QL + +P+ V ++R+ L L+ + G+SI++Q + ++ Sbjct: 64 LPGIVQLVIAIVGAIPVCIVVSLLIERIAYRPLRNAPRLAPLITAIGVSILLQTLAMMIW 123 Query: 119 TSDPRAIDTGELNMQSLSLGDHLSVG---ILPLSIFIIAILVVA--AMQWLFGRTALGRA 173 P L + D + + I P I ++A+ V+A + + +T +GRA Sbjct: 124 GRSP-------LPFPQVMPSDPVHIAGALISPTQIMLLALAVLAMVGLVLIVEKTKMGRA 176 Query: 174 FRATSDDKEAAQLMGLDARRVYGLA-------TGLAFVLVAIAGTLQGMRTTFSPTDGPA 226 RAT+++ A LMG+DA +V + +A V+ A + F P Sbjct: 177 MRATAENPRIAGLMGVDANKVIVVTFAIGAGLAAIAGVMWAANYSTAQFAMGFVPG---- 232 Query: 227 LLLLAFESVIIGGLGSFWGTFAGALILGATQSIGFR---------LDPGWGIWFGHIVFL 277 L AF + ++GG+G+ +G G ++LG +S+G L + F IV + Sbjct: 233 --LKAFSAAVLGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGNFLGSNYQDIFAFIVLI 290 Query: 278 LMLALRPQGLF 288 ++L LRP G+ Sbjct: 291 IVLTLRPSGIM 301 >gi|300311880|ref|YP_003775972.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 304 Score = 92.8 bits (229), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 89/304 (29%), Positives = 150/304 (49%), Gaps = 24/304 (7%) Query: 1 MWSWIDTLVQGLMLGGLYALFAMGQSLMFGVMRLTNTAHGDFLILAAFAAFSLLSAFGLH 60 M +++ + GL+ G +Y+L A+G L++ + N A G + AA A L+ Sbjct: 1 MQFFLEVTLSGLLSGLMYSLVALGFVLIYKASGVFNFAQGAMVYFAALAVVGLME----K 56 Query: 61 GVGATAAIQLALLPLAFVFGYGLQRLVLNGTLGKDPLPSLVVSFGLSIVIQNMLTEVFTS 120 G+ AAI A + + V G +R VL + + P+ + + GL+ ++ + +F S Sbjct: 57 GMPMWAAIIGAFVVMILV-GLATERFVLRKLVNQPPITLFMATIGLTFFLEGLGPLLFGS 115 Query: 121 DPRAIDTGELNMQSLSLGDHLSVGILPLSIFI--IAILVVAAMQWLFGRTALGRAFRATS 178 + R ID G ++ S+ D + +GI +F + + +VAA+ F +T +GRA RA + Sbjct: 116 EVRPIDLGIVDEPIQSVMDSIGIGISKFDLFASGMVVALVAALALFFQKTKVGRALRAVA 175 Query: 179 DDKEAAQLMGLDARRVYGLATGLAFVLVAIAGTLQGMRT--TFSPTDGPALLLLAFESVI 236 DD +AA +G+ + ++ + G+A + IAG L G R F+ T L A +I Sbjct: 176 DDHQAALSLGIPLQHIWAVVWGVAGFVALIAGLLWGSRNGVQFALT---MTALKALPVLI 232 Query: 237 IGGLGSFWGTFAGALILGATQSIGFRLDP------------GWGIWFGHIVFLLMLALRP 284 +GG S G G LI+GA++ + P G WF ++ LL L +RP Sbjct: 233 LGGFTSIPGAIVGGLIIGASEKLAEIYIPPVMQDAFGGNFGGIEGWFPYVFALLFLLVRP 292 Query: 285 QGLF 288 +GLF Sbjct: 293 EGLF 296 >gi|300314070|ref|YP_003778162.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 294 Score = 91.7 bits (226), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 76/282 (26%), Positives = 137/282 (48%), Gaps = 13/282 (4%) Query: 15 GGLYALFAMGQSLMFGVMRLTNTAHGDFLILAAFAAFSLLSAFGLHGVGATAAIQLALLP 74 G YA+ ++G +++FG++ + N AHG +L AF A+ LS GL+ + L + P Sbjct: 22 GSFYAMLSLGLAVIFGLLNVINFAHGTLYMLGAFLAWMGLSYLGLN-----YWVMLIVAP 76 Query: 75 -LAFVFGYGLQRLVLNGTLGKDPLPSLVVSFGLSIVIQNMLTEVFTSDPRAIDTGELNMQ 133 L FG +++ +L D L L+++FG++++I+ + ++ + +L Sbjct: 77 ILVGAFGIVIEKTMLRWLYKLDHLYGLLLTFGITLMIEGIFRSIYGVSGQPYSVPDLLQG 136 Query: 134 SLSLGDHLSVGILP--LSIFIIAILVVAAMQW-LFGRTALGRAFRATSDDKEAAQLMGLD 190 + +LG +LP + ++A L+V W + +T LG RA +++ + + G++ Sbjct: 137 ATNLGFM----VLPNYRAWVVVASLIVCFATWFVIEKTRLGAYLRAGTENPKLVEAFGIN 192 Query: 191 ARRVYGLATGLAFVLVAIAGTLQGMRTTFSPTDGPALLLLAFESVIIGGLGSFWGTFAGA 250 + L G L A AG L SP G L++ F V+IGG+GS G+ Sbjct: 193 VPLMVTLTYGFGVALAAFAGVLAAPVIQVSPLMGSNLIITVFAVVVIGGMGSILGSIITG 252 Query: 251 LILGATQSIGFRLDPGWGIWFGHIVFLLMLALRPQGLFPKTR 292 L+LG + + P I+ ++L +RP GLF K + Sbjct: 253 LVLGLIEGLTRVFYPELSATVVFIIMAIVLMVRPAGLFGKEK 294 >gi|300311114|ref|YP_003775206.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 296 Score = 90.1 bits (222), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 94/305 (30%), Positives = 148/305 (48%), Gaps = 32/305 (10%) Query: 5 IDTLVQ----GLMLGGLYALFAMGQSLMFGVMRLTNTAHGDFLILAAFAAFSLLSAFGLH 60 +D L+Q G+ LG +YA+ A G L F N G+ L+L A S++ +H Sbjct: 1 MDILLQLVFSGIALGMIYAVIAFGYQLTFATSGTLNFGQGEALMLGALVGLSVVG--NIH 58 Query: 61 GVGATAAIQLALLPLAFVFGYGLQRLVLNGTLGKDPLPSLVVSFG-------LSIVIQNM 113 G G L ++P+ VFG LQ + + +G P + FG L+I+ +N+ Sbjct: 59 G-GPYLNYWL-MIPIVLVFG-ALQGMFVE-WIGVRPAIKIKSEFGWIMSTIALAIIFKNV 114 Query: 114 LTEVFTSD----PRAIDTGELNMQSLSLGDHLSVGILPLSIFII--AILVVAAMQWLFGR 167 ++ D P I + + P+ + ++ A+L++AA++ + Sbjct: 115 AENIWGKDDLPFPSPISGAPFQI--------FGANVQPMQVLVVVGALLIMAAVELFNRK 166 Query: 168 TALGRAFRATSDDKEAAQLMGLDARRVYGLATGLAFVLVAIAGTLQGMRTTFSPTDGPAL 227 + G+A ATS+D++AA LMG++ V + L+ A AG L T T G AL Sbjct: 167 SIYGKAVVATSNDRDAAGLMGINTSMVITFSYALSSATAAFAGVLVAPLTLTGATMGAAL 226 Query: 228 LLLAFESVIIGGLGSFWGTFAGALILGATQSI-GFRLDPGWGIWFGHIVFLLMLALRPQG 286 L AF IIGGL S G G LILG +++ GF + G+ G ++ LL+LA++P G Sbjct: 227 GLKAFAVAIIGGLTSGMGAIVGGLILGVAETLTGFYISTGYKEVPGLVLLLLVLAVKPAG 286 Query: 287 LFPKT 291 LF KT Sbjct: 287 LFGKT 291 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.329 0.144 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 891,312 Number of extensions: 36208 Number of successful extensions: 271 Number of sequences better than 1.0e-08: 22 Number of HSP's gapped: 250 Number of HSP's successfully gapped: 22 Length of query: 292 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 208 Effective length of database: 1,222,130 Effective search space: 254203040 Effective search space used: 254203040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)