BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0150.p (233 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312951|ref|YP_003777043.1| amino acid ABC transporter ATPa... 199 1e-52 gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 187 5e-49 gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPa... 184 7e-48 gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPa... 183 1e-47 gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC t... 181 4e-47 >gi|300312951|ref|YP_003777043.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 236 Score = 199 bits (507), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 107/224 (47%), Positives = 145/224 (64%), Gaps = 2/224 (0%) Query: 1 MSALLETHGLTAHYGDFQALFGIDFVVEPGEVVALIGANGAGKSTFLKSVTGLLKAPRDS 60 MSALLE GLT YG Q LFGID V GEVV L+G NG GK+T L+++ GL + Sbjct: 1 MSALLEVEGLTGGYGASQVLFGIDMQVREGEVVTLLGRNGMGKTTTLRTILGLNRPTGGV 60 Query: 61 VRFGGETISGLAPDKIVGRGIALVPEGRRLFPSLSVEENLMIGGFTR--RAGAWNLNAVY 118 VRF GE I + D I RG+A+VPEGR++F +LSVEENL R R W L +Y Sbjct: 61 VRFRGEAIHSASADAIARRGMAIVPEGRQIFKNLSVEENLSAFAARRNGRDNPWTLEKIY 120 Query: 119 KLFPILRERRHAPGTALSGGQQQMVAIGRALMSNPQLLICDELSLGLAPIVVKEIYDALP 178 + FP L+ERRH G LSGG+QQM+AIGRALM+NP LLI DE + GLAP+V +EI+ L Sbjct: 121 QQFPRLKERRHNGGGQLSGGEQQMLAIGRALMTNPHLLILDEATEGLAPLVREEIWSCLK 180 Query: 179 SITQDGLSLIVVEQDVATARAVSQRLYCLQEGRVSLTGRSQDVT 222 ++ + GL++IV+++ + + + L++G+V G S ++ Sbjct: 181 ALREYGLTIIVIDKYIKRLIGFADQHTILEKGKVVWQGDSAQLS 224 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 187 bits (476), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 100/232 (43%), Positives = 149/232 (64%), Gaps = 3/232 (1%) Query: 4 LLETHGLTAHYGDFQALFGIDFVVEPGEVVALIGANGAGKSTFLKSVTGLLKAPRDSVRF 63 +L+ + HYG +AL G+ VE GE+V LIGANGAGK+T L ++ G +A V F Sbjct: 2 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 61 Query: 64 GGETISGLAPDKIVGRGIALVPEGRRLFPSLSVEENLMIGGF--TRRAGAWNLNAVYKLF 121 G+ I+ L +I+ RG+A+ PEGRR+FPSL+V ENL +G F + A + V+ LF Sbjct: 62 EGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQGIEYVFGLF 121 Query: 122 PILRERRHAPGTALSGGQQQMVAIGRALMSNPQLLICDELSLGLAPIVVKEIYDALPSIT 181 P L+ER +SGG+QQM+AIGRALMS P+LL+ DE +LGLAP+V+ +I+D + +I Sbjct: 122 PRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIRTIR 181 Query: 182 QDGLSLIVVEQDVATARAVSQRLYCLQEGRVSLTGRSQD-VTHEQISKAYFG 232 + G+++ +VEQ+ A V+ R Y L+ G V ++ + + + + KAY G Sbjct: 182 ESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLG 233 >gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 184 bits (466), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 98/238 (41%), Positives = 151/238 (63%), Gaps = 7/238 (2%) Query: 2 SALLETHGLTAHYGDFQALFGIDFVVEPGEVVALIGANGAGKSTFLKSVTGLLKAPRDSV 61 + +LE L+A YG + L GID VE G++V +IG NGAGK+T L ++ G+L + R ++ Sbjct: 3 NKVLEVRDLSAAYGKVEVLAGIDLSVEQGKIVTVIGPNGAGKTTLLSAIMGVLPS-RGAM 61 Query: 62 RFGGETISGLAPDKIVGRGIALVPEGRRLFPSLSVEENLMIGGFTR-----RAGAWNLNA 116 F G +++V G+ LVPE R LF +++E+NLM+G F R R A L Sbjct: 62 AFDGAIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRTGQRDHAATLEE 121 Query: 117 VYKLFPILRERRHAPGTALSGGQQQMVAIGRALMSNPQLLICDELSLGLAPIVVKEIYDA 176 VY LFP LRERR LSGG++QM+A+GRALM+ P+LL+ DE SLGLAP++V+EI+ Sbjct: 122 VYTLFPRLRERRSQQAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVREIFRI 181 Query: 177 LPSITQDGLSLIVVEQDVATARAVSQRLYCLQEGRVSLTGRSQDVTHE-QISKAYFGI 233 + + + G+S+++VEQ+ A V+ Y L+ G + + G + + H+ ++ +AY G+ Sbjct: 182 IAELRRRGVSILLVEQNARAALQVADYGYVLENGAIRMHGPASQLAHDRRVIEAYLGL 239 >gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 183 bits (464), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 95/233 (40%), Positives = 151/233 (64%), Gaps = 4/233 (1%) Query: 4 LLETHGLTAHYGDFQALFGIDFVVEPGEVVALIGANGAGKSTFLKSVTGLLKAPRDSVRF 63 +L+ L YG +A+ GI + GE+ AL+GANGAGKST L +++GL+KA R V Sbjct: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLL 69 Query: 64 GGETISGLAPDKIVGRGIALVPEGRRLFPSLSVEENLMIGGFTRRAG---AWNLNAVYKL 120 G+ + ++P +IV G+ V EGR +L+VEENL +G +TR+ A +L VY L Sbjct: 70 HGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLGLGAYTRKDKDGVARDLEWVYSL 129 Query: 121 FPILRERRHAPGTALSGGQQQMVAIGRALMSNPQLLICDELSLGLAPIVVKEIYDALPSI 180 FP+L+ R LSGG+QQM+AIGRALM+ P++L+ DE S+GLAP++++EI+ + I Sbjct: 130 FPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEI 189 Query: 181 TQDGLSLIVVEQDVATARAVSQRLYCLQEGRVSLTGRSQDVT-HEQISKAYFG 232 + G+++++VEQ+V A ++QR Y L+ G++ L ++ + ++ +AY G Sbjct: 190 NKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 242 >gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 181 bits (460), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 96/231 (41%), Positives = 143/231 (61%), Gaps = 3/231 (1%) Query: 4 LLETHGLTAHYGDFQALFGIDFVVEPGEVVALIGANGAGKSTFLKSVTGLLKAPRDSVRF 63 +L+ + +YG L G+ V+ GEVV L+G NGAGK+T LKS+ G++ + V F Sbjct: 2 ILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPVQGRVLF 61 Query: 64 GGETISGLAPDKIVGRGIALVPEGRRLFPSLSVEENLMIGGFTRRAGAWNLNAVYKLFPI 123 G+ ISGL KI RG+ LVPE R +F L+VEENL + R+ AW L +Y +FP Sbjct: 62 EGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLTMA--ARKESAWGLEEIYAIFPR 119 Query: 124 LRERRHAPGTALSGGQQQMVAIGRALMSNPQLLICDELSLGLAPIVVKEIYDALPSITQD 183 L+ERR G LSGG+QQM+AI RALM++P++L+ DE GLAP++V EI + I Sbjct: 120 LKERRKNGGGQLSGGEQQMLAIARALMTHPRVLMLDEPVEGLAPVIVDEIVAQIRQIKAT 179 Query: 184 GLSLIVVEQDVATARAVSQRLYCLQEGRVSLTGRSQD-VTHEQISKAYFGI 233 G+S+I+VEQ++ ++ R Y +++GR+ G + + + E + Y G+ Sbjct: 180 GMSIILVEQNLEVCTQLADRHYIVEQGRIVYHGSNAEFLADEGVKDRYLGV 230 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.138 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 757,475 Number of extensions: 33066 Number of successful extensions: 463 Number of sequences better than 1.0e-08: 123 Number of HSP's gapped: 311 Number of HSP's successfully gapped: 137 Length of query: 233 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 151 Effective length of database: 1,231,600 Effective search space: 185971600 Effective search space used: 185971600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)