BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0149.p (216 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 157 5e-40 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 147 5e-37 gi|300311770|ref|YP_003775862.1| branched-chain amino acid ABC t... 147 9e-37 gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC t... 135 3e-33 gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC t... 135 3e-33 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 157 bits (398), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 87/229 (37%), Positives = 135/229 (58%), Gaps = 14/229 (6%) Query: 1 MSVGEGETLGILGPNGAGKTTLFNLISGDVRPDRGRIRFAGSDISGAPAHRRCRSGIGRS 60 +V +GE G++GPNGAGKTT+FNLI+G +R G IRF DI H+ GI R+ Sbjct: 23 FNVRQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRFNDDDIGAVAPHKITERGIART 82 Query: 61 YQVPQPYSAMTVFENCLVA---------ASF-----GAGLSERQAYPVCVDVLDKTGLLA 106 +Q + + MT+ EN +V AS G +E++A +++L L Sbjct: 83 FQNIRVFKEMTLLENVVVGMHDHLNYGVASMLLNLGGFRNAEKEARERALELLSWVRLDH 142 Query: 107 KANLIAGALTLLDRKRLELARALSTRPGLLLLDEIAGGLTEHEAQILVDEIKSIKSQGVT 166 KA+++A +L+ ++++LE ARAL+T+P LLLLDE G+ E L+ EI +IK +G T Sbjct: 143 KAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGMNPAEKTELMSEIVNIKQRGFT 202 Query: 167 MIWIEHVVHALLAVADRLLVLNFGAVIADGAPMAVLDDPEVKRVYMGLE 215 + IEH + ++ + +R+ VLNFG +IA+G P + ++ EV Y+G E Sbjct: 203 IFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNNQEVIEAYLGKE 251 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 147 bits (372), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 90/230 (39%), Positives = 131/230 (56%), Gaps = 15/230 (6%) Query: 1 MSVGEGETLGILGPNGAGKTTLFNLISGDVRPDRGRIRFAGSDISGAPAHRRCRSGIGRS 60 ++V E E I+GPNGAGKTT+FN ISG RP G I G+ I+ P+H+ + G+ R+ Sbjct: 29 LAVQEREVFAIIGPNGAGKTTVFNCISGFYRPTSGEIMLDGASIARQPSHQVAQQGLVRT 88 Query: 61 YQVPQPYSAMTVFENCLVA------ASFGAGL--------SERQAYPVCVDVLDKTGLLA 106 +Q + + +MTV EN LVA + +GL SE++A LD+ GL A Sbjct: 89 FQNIRLFKSMTVVENLLVAQHQQVNTNLLSGLLKTPAYRKSEQEALQRAAYWLDQLGLTA 148 Query: 107 KANLIAGALTLLDRKRLELARALSTRPGLLLLDEIAGGLTEHEAQILVDEIKSIKSQ-GV 165 AN AG L+ ++R+E+AR + T+P LLLLDE A GL E Q L I ++ + GV Sbjct: 149 LANREAGTLSYGLQRRVEIARCMITKPRLLLLDEPAAGLNPQEKQELSQLIDRLRREHGV 208 Query: 166 TMIWIEHVVHALLAVADRLLVLNFGAVIADGAPMAVLDDPEVKRVYMGLE 215 ++ IEH + ++ ++DR+LV+ G I G P V D V + Y+G E Sbjct: 209 AVLLIEHDMSLIMGISDRILVMEHGKPIVTGTPEQVRSDERVIKAYLGEE 258 >gi|300311770|ref|YP_003775862.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 147 bits (370), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 127/221 (57%), Gaps = 18/221 (8%) Query: 6 GETLGILGPNGAGKTTLFNLISGDVRPDRGRIRFAGSDISGAPAHRRCRSGIGRSYQVPQ 65 G+ L ++GPNGAGK+T FNLI+G +RPDRG + G I+G A R R G+GR++QV Sbjct: 29 GQMLALIGPNGAGKSTCFNLINGQLRPDRGEVLLDGQSITGLDARRIWRRGVGRTFQVSA 88 Query: 66 PYSAMTVFENCLVAASFGAGLS-ERQAYPV-----------CVDVLDKTGLLAKANLIAG 113 +S+MTV ++ A LS R+ + + +++LD+ G+ A+A Sbjct: 89 AFSSMTVLQSVQAAL-----LSHHRRLWQLWRPADSLFRQQAMELLDQVGMAAQAQRACA 143 Query: 114 ALTLLDRKRLELARALSTRPGLLLLDEIAGGLTEHEAQILVDEIKS-IKSQGVTMIWIEH 172 L D KR+ELA ALS P LLL+DE G+ E Q L+ + + +G+ +++ EH Sbjct: 144 VLAYGDIKRVELAMALSNAPRLLLMDEPTAGMATQERQALMALTRRLVNERGIAVLFTEH 203 Query: 173 VVHALLAVADRLLVLNFGAVIADGAPMAVLDDPEVKRVYMG 213 + + A ADR+LVL G ++ADGAP V D V+ +Y G Sbjct: 204 SMDVVFAHADRILVLARGQLVADGAPAVVRADARVRELYFG 244 >gi|300310523|ref|YP_003774615.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 135 bits (339), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 123/227 (54%), Gaps = 14/227 (6%) Query: 1 MSVGEGETLGILGPNGAGKTTLFNLISGDVRPDRGRIRFAGSDISGAPAHRRCRSGIGRS 60 +++ G+ G++GPNGAGKTT FN+I+G +PD G G S + H ++GI R+ Sbjct: 26 ITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGTFELDGKPYSPSAPHEVAKAGIART 85 Query: 61 YQVPQPYSAMTVFENCLVAAS-------FGAGLSERQAYP-------VCVDVLDKTGLLA 106 +Q + + MTV EN +V FGA + A +LD G+ Sbjct: 86 FQNIRLFGEMTVLENVMVGCHVRTKQNVFGAVFRHKAAREEEAAIREKSQKLLDFVGIGQ 145 Query: 107 KANLIAGALTLLDRKRLELARALSTRPGLLLLDEIAGGLTEHEAQILVDEIKSIKSQGVT 166 A A L+ D++RLE+ARAL+T P LL LDE A G+ E L + + I+++G T Sbjct: 146 FAKRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGMNATEKLGLRELLVKIQAEGKT 205 Query: 167 MIWIEHVVHALLAVADRLLVLNFGAVIADGAPMAVLDDPEVKRVYMG 213 ++ IEH V ++ + +R+ VL++G IA+G P V +P V Y+G Sbjct: 206 ILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQKNPAVIEAYLG 252 >gi|300309521|ref|YP_003773613.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 135 bits (339), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 123/227 (54%), Gaps = 14/227 (6%) Query: 1 MSVGEGETLGILGPNGAGKTTLFNLISGDVRPDRGRIRFAGSDISGAPAHRRCRSGIGRS 60 +++ G+ G++GPNGAGKTT FN+I+G +PD G G S + H ++GI R+ Sbjct: 26 ITIERGQIYGLIGPNGAGKTTFFNVITGLYQPDTGTFELDGKPYSPSAPHEVAKAGIART 85 Query: 61 YQVPQPYSAMTVFENCLVAAS-------FGAGLSERQAYP-------VCVDVLDKTGLLA 106 +Q + + MTV EN +V FGA + A +LD G+ Sbjct: 86 FQNIRLFGEMTVLENVMVGCHVRTRQNVFGAVFRHKAAREEEAAIREKSQKLLDFVGIGQ 145 Query: 107 KANLIAGALTLLDRKRLELARALSTRPGLLLLDEIAGGLTEHEAQILVDEIKSIKSQGVT 166 A A L+ D++RLE+ARAL+T P LL LDE A G+ E L + + I+++G T Sbjct: 146 FAKRTARHLSYGDQRRLEIARALATDPQLLALDEPAAGMNATEKLGLRELLVKIQAEGKT 205 Query: 167 MIWIEHVVHALLAVADRLLVLNFGAVIADGAPMAVLDDPEVKRVYMG 213 ++ IEH V ++ + +R+ VL++G IA+G P V +P V Y+G Sbjct: 206 ILLIEHDVKLMMGLCNRITVLDYGKPIAEGVPADVQKNPAVIEAYLG 252 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.139 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 681,451 Number of extensions: 27673 Number of successful extensions: 428 Number of sequences better than 1.0e-08: 116 Number of HSP's gapped: 315 Number of HSP's successfully gapped: 120 Length of query: 216 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 135 Effective length of database: 1,236,335 Effective search space: 166905225 Effective search space used: 166905225 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)