BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0147.p
         (489 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313015|ref|YP_003777107.1| maleylacetate reductase [Herbas...   494   e-141
gi|300309488|ref|YP_003773580.1| 4-hydroxybutyrate dehydrogenase...   112   8e-26

>gi|300313015|ref|YP_003777107.1| maleylacetate reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 356

 Score =  494 bits (1272), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 257/350 (73%), Positives = 295/350 (84%)

Query: 140 FQFDSQLPRVVFGAGSLRHLEREIDRLGAIRALVLCTPEQRANAEVVQTIIGARCAGIFD 199
           F + S   RV+FG GSL+HL RE + LGA RALVLCTP QRA AE V  +IGARCAGIFD
Sbjct: 4   FTYTSAAARVIFGHGSLQHLVRETELLGAQRALVLCTPGQRAEAERVAALIGARCAGIFD 63

Query: 200 QAVMHVPIETARAARDIARELQADCAIAVGGGSTTGLGKAIALESALPILAVPTTYAGSE 259
           QAVMHVPIETAR AR++AR L ADCAIA+GGGST GLGKAIALES LPILA+PTTYAGSE
Sbjct: 64  QAVMHVPIETARHAREVARALGADCAIAIGGGSTMGLGKAIALESELPILAIPTTYAGSE 123

Query: 260 MTPIYGITENGIKKTGRDSRVLPQTVIYDPELTLTLPTRLSVTSGINAIAHAAEGLYAQE 319
           MTPIYG+TE G KKTGRD+RVLP+TVIYDP L+L LP  LSVTSGINA+AHAAEGLYA +
Sbjct: 124 MTPIYGLTEAGRKKTGRDARVLPRTVIYDPALSLGLPLDLSVTSGINAMAHAAEGLYAPD 183

Query: 320 SNPIMSLLAEEGIRALAQSLPAIVADPADIAARSGALYGAWLCGAVLGNVGMSLHHKLCH 379
           +NPIMSLLAEEG+RALA+ LP + A   DI ARS  LYGAWLCG VLGNVGMSLHHKLCH
Sbjct: 184 ANPIMSLLAEEGLRALAEGLPQLAARADDIDARSRCLYGAWLCGTVLGNVGMSLHHKLCH 243

Query: 380 TLGGSYNLPHAETHTIVLPHALAYNAAAAPDAMRRIARALGTDDAALGMYELAHRLGAPV 439
           TLGGSYNLPHA+THT++LPHALAYNAAAAP AM+RIARALG +DAA G+Y LA  L AP+
Sbjct: 244 TLGGSYNLPHAQTHTVILPHALAYNAAAAPQAMQRIARALGVEDAAQGVYALARALHAPL 303

Query: 440 ALKDIGMREQELDRCADIASQNAYWNPRPIERDAIRTLLDDAYRGRAPAG 489
           +LK++GM  + L +C +IA QNAY NPRP++R+A+  LL+DA+ GR PAG
Sbjct: 304 SLKELGMPYEALAQCTEIALQNAYANPRPLQREALHALLEDAWHGRPPAG 353


>gi|300309488|ref|YP_003773580.1| 4-hydroxybutyrate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 379

 Score =  112 bits (280), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 117/385 (30%), Positives = 183/385 (47%), Gaps = 52/385 (13%)

Query: 133 VMNSVPNFQFDSQLPRVVFGAGSLRHLEREIDRLGAIRALVLCTPEQRANAEVVQTIIGA 192
           ++N +   QFD          G+L  L++E DRLG  + LV+     R NA ++  ++G 
Sbjct: 3   LINYITQVQFDY---------GALALLQQECDRLGIKKPLVVTDMGIR-NAGLLDKVLGQ 52

Query: 193 RCAGI----FDQAVMHVPIETARAARDIARELQADCAIAVGGGSTTGLGKAIA------- 241
              G+    +DQ   +      RAA  + R+   D  +AVGGGS+  L K +A       
Sbjct: 53  LKEGVGAVVYDQTPPNPNEGAVRAAVALFRQHGCDGIVAVGGGSSIDLAKGVAVCGTHEG 112

Query: 242 -------LESAL--------PILAVPTTYA-GSEMTPIYGITENGIKKTGRDS-RVLPQT 284
                  +E  L        P++A+PTT   GSE+     +  +  +K G  S  ++P+ 
Sbjct: 113 PLKSFALIEGGLANITAKTAPVIAIPTTAGTGSEVGRGAILILDDGRKVGIISPYLVPKL 172

Query: 285 VIYDPELTLTLPTRLSVTSGINAIAHAAEGLYAQESNPIMSLLAEEGI-RALAQSLPAIV 343
            I DPELTL LP  ++  +G++AIAH  E   A   NP    +A +G+ RA A  +    
Sbjct: 173 AICDPELTLGLPPLMTAATGMDAIAHCLETFMAPSFNPPADGIALDGLWRAWAH-IERAT 231

Query: 344 ADPADIAARSGALYGAWLCGAVLGNVGMSLHHKLCHTLGG-SYNLPHAETHTIVLPHALA 402
            +P D  AR   +  A + GA+    G+   H L H+LGG +  L H   + I LP  +A
Sbjct: 232 REPGDREARLN-MMSASMQGAMAFQKGLGCVHSLSHSLGGINPRLHHGTLNAIFLPAIIA 290

Query: 403 YNAAAA----PDAMRRIARALGTDDAA-LG--MYELAHRLGAPVALKDIGMREQELDRCA 455
           +N +AA     + M R+A A+G    A +G  + E++ RLG P  L ++G+ E    +  
Sbjct: 291 FNESAASMVKDNKMARMAHAMGLGSGAEIGPAIREMSRRLGLPAGLGELGVTESMFPQII 350

Query: 456 D--IASQNAYWNPRPI-ERDAIRTL 477
              +A  +   NPR   E+D +  L
Sbjct: 351 QGALADHSHKTNPREASEQDYLHML 375


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.133    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,311,351
Number of extensions: 50974
Number of successful extensions: 193
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 2
Length of query: 489
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 400
Effective length of database: 1,198,455
Effective search space: 479382000
Effective search space used: 479382000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)