BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0137.p
         (286 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310596|ref|YP_003774688.1| 2-keto-4-pentenoate hydratase/2...   141   8e-35
gi|300312873|ref|YP_003776965.1| hypothetical protein Hsero_3578...    81   9e-17

>gi|300310596|ref|YP_003774688.1| 2-keto-4-pentenoate
           hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
           [Herbaspirillum seropedicae SmR1]
          Length = 281

 Score =  141 bits (355), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 89/255 (34%), Positives = 132/255 (51%), Gaps = 15/255 (5%)

Query: 31  GKYADLLAALQAGALVELEEAVSRGGLTYDLNEIEFLPVIPNPPKI----------ICIG 80
           GK  DL A ++      L++A        DLN    LPV+   P+I          ICIG
Sbjct: 21  GKIRDLSAHIKDVNGAVLDDASLEKIRKLDLNT---LPVVEGNPRIGACVGNIGKFICIG 77

Query: 81  INYETHRSETGKDLSAKPWVFGRFANSQVGHGQPLIAPLESTRFDYEGEIAVIIGKRGRR 140
           +NY  H +E+   + A+P VF ++ ++ VG    +  P  S + D+E E+ VIIGK G  
Sbjct: 78  LNYADHAAESNLPIPAEPVVFNKWTSAVVGPNDNVKIPRGSKKTDWEVELGVIIGKGGSY 137

Query: 141 ISQAASWEHIAGYAPYNDGSVRDWQ-RHTPQWVPGKNFVGSGGFGPWMATRGEIADNAEL 199
           I +  +  H+AGY   ND S R++Q      W  GK     G  GPW+ TR E+AD  +L
Sbjct: 138 IDEKDAMSHVAGYCVVNDVSEREYQIERGGTWDKGKGCDTFGPIGPWLVTRDEVADPQKL 197

Query: 200 HLSTRVNGRELQRATSHEMIQSIPQIIEYCSTFTELEPGDVIVTGTPGGVGARQEP-PLF 258
            +   V+G+  Q   +  MI ++  I+ Y S F  L+PGDVI TGTP GVG   +P  ++
Sbjct: 198 GMWLEVDGKRYQNGNTSTMIFNVAHIVSYLSRFMSLQPGDVISTGTPPGVGMGVKPEAVY 257

Query: 259 MKDGDIVEIEIAEIG 273
           ++ G  + + I  +G
Sbjct: 258 LRAGQTIRLGIDGLG 272


>gi|300312873|ref|YP_003776965.1| hypothetical protein Hsero_3578
           [Herbaspirillum seropedicae SmR1]
          Length = 227

 Score = 81.3 bits (199), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 8/183 (4%)

Query: 75  KIICIGINYETHRSETGKDLSAKP-WVFGRFANSQVGHGQPLIAPLESTRFDYEGEIAVI 133
           +I C+G NY  H  E G D   +P + F + A++ V     +  P+ ++ + +E E+ V 
Sbjct: 25  RIYCVGRNYAAHAREMGHDPDREPPFFFMKPADAVVPTDSVVPYPVATSDYHHEIELVVA 84

Query: 134 IGKRGRRISQAASWEHIAGYAPYNDGSVRDWQRHTPQ----WVPGKNFVGSGGFGPWM-A 188
           + K GR I    + E + GYA   D + RD Q    +    W   K F  S    P +  
Sbjct: 85  LAKGGRNIPVEQALELVFGYAVGLDMTRRDIQSQAKKLGRPWDMAKGFDQSAPCAPIVPV 144

Query: 189 TRGEIADNAELHLSTRVNGRELQRATSHEMIQSIPQIIEYCSTFTELEPGDVIVTGTPGG 248
            +    D   + L  +VNG   Q+    ++I S+ + I Y S   EL PGD+I TGTP G
Sbjct: 145 AQAGHPDQGAVWL--KVNGEVRQQGDLADLIWSVAETISYLSGLVELFPGDLIFTGTPEG 202

Query: 249 VGA 251
           VGA
Sbjct: 203 VGA 205


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 961,462
Number of extensions: 40724
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 2
Length of query: 286
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,222,130
Effective search space: 246870260
Effective search space used: 246870260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)