BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0136.p
         (399 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310486|ref|YP_003774578.1| major facilitator superfamily p...    58   2e-09

>gi|300310486|ref|YP_003774578.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 430

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 8/142 (5%)

Query: 9   SVVNTYMATALGWNSQTLGLLISVNMTIAAIFSPIAANAIARIGIRNSIVVGCLTMVVGG 68
           SV+   +    GWN  T+ ++ISVN+ +  +  P +A A+ R GIR  ++   + +  G 
Sbjct: 41  SVMILPLEQEFGWNRSTISVVISVNIALYGLIGPFSAAAMQRFGIRRVVLAALVLLASGT 100

Query: 69  AWLATVAAQPWEAIVAFSVLMGLTSAFSGIVPCQAG---VAAWFVRRRTFAISVLFAVVG 125
           A L+T+   PW  ++++ +L+G   A +G+     G   V+ WF  RR  A+ +L A   
Sbjct: 101 A-LSTLMHMPWHMLLSWGLLVG---AGTGVAANTLGATIVSRWFETRRGLAMGLLTASAA 156

Query: 126 VASFAVIALIGAAVESPGGWRS 147
                 + L+ A V S  GWRS
Sbjct: 157 TGQMVFLPLMAAMVGSY-GWRS 177


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,029,383
Number of extensions: 37381
Number of successful extensions: 234
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 2
Length of query: 399
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 312
Effective length of database: 1,207,925
Effective search space: 376872600
Effective search space used: 376872600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)