BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0130.p
         (307 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313737|ref|YP_003777829.1| gluconolactonase [Herbaspirillu...    55   5e-09

>gi|300313737|ref|YP_003777829.1| gluconolactonase [Herbaspirillum
           seropedicae SmR1]
          Length = 306

 Score = 55.5 bits (132), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 113/266 (42%), Gaps = 17/266 (6%)

Query: 31  EHDGTLWISD-DRGGVTRRDPSGTQQVMGSIRGTPNGLAMTSSLDLLVADIENGIVYRLD 89
           +  G L+++D   G + R    G  +++    G PNGL +  +  +++ D + G+V    
Sbjct: 50  DRQGRLYVTDIPYGRIFRITMDGQWELVTEYDGWPNGLKIDKTGRIVITDYKRGLVQLDP 109

Query: 90  REGRHEIVLDRLDNQALGSVNFVYVDVRGVTWITVSTRT--QPRKEAIARPIPDGYVLRL 147
             G    +L+ + ++    VN +    +G  + T   +T  Q     + R  PDG +  L
Sbjct: 110 DTGTVTPLLETVGSEGFKGVNDLVFGPKGEIYFTDQGQTGLQDPTGRVYRLAPDGQLTCL 169

Query: 148 DAGGPHVVAAGLCFPNEMRIDRHYRYAYVAESARGRVLRMPLLPDGTLGPQEVFGPAQLF 207
               P         PN +  D    +  VA +   ++ R+PL  +G +G   VF  A L 
Sbjct: 170 INTIPS--------PNGIVYDPALNHLLVAVTRAQQIWRIPLHHNGVVGKVGVF--ANLH 219

Query: 208 EG-AIVDGIAFDALDGLWVTEVTRNAIYRIAADGSCECLIEDPDGKVLLFPASVTFAGDD 266
            G A  DG+A DA   L++      +I+R++        I    G   +   ++ F G D
Sbjct: 220 GGMAGPDGLALDAESNLYIAHTGFGSIWRLSKFAEPLLRIRSSAG---ISTTNLAFGGPD 276

Query: 267 LRTVLVGSIKAGHLACLRSPIPGTPL 292
            +++ +   + G +     P+ G P+
Sbjct: 277 GKSLFITESQTGSILRADVPVAGLPM 302


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.139    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,069,924
Number of extensions: 48394
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 222
Effective length of database: 1,217,395
Effective search space: 270261690
Effective search space used: 270261690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)