BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0127.p
         (647 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312241|ref|YP_003776333.1| subtilisin-like serine protease...   417   e-117

>gi|300312241|ref|YP_003776333.1| subtilisin-like serine protease
           [Herbaspirillum seropedicae SmR1]
          Length = 739

 Score =  417 bits (1073), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 275/707 (38%), Positives = 370/707 (52%), Gaps = 88/707 (12%)

Query: 9   RLEITQRESAFDGQRFGDAGA-YEWLRGRVFGKLDPSHPSNAAVALLDLAPRNVEGYVEY 67
           +LEITQ   AF G     A   Y+ + G V GKLD  HP NA +  LD APR+  GYV Y
Sbjct: 35  QLEITQTADAFGGATPAGAAGPYQLVSGIVHGKLDAHHPDNAMITDLDKAPRDAHGYVSY 94

Query: 68  WSDVVILKPVQMSSANRILLYDVLNRGEQKALTAFNDVPRSTNLLGPDAAGNGF--LMRR 125
            +D VIL+P   + A R+L YDV NRG + A   F       N  GP A G+ +  L+R 
Sbjct: 95  TTDFVILRPKSAAQARRVLFYDVANRGRKLAEEFFIGGKSLRN--GP-APGDNYPSLLRA 151

Query: 126 GYTMAWSGWQGDLRTSTEL----LCTGFPV-AQSEGKPFVGYSREEFVFDSLKNPLVGTL 180
           GYT+ WSGWQGDL+ S       L T FPV A  +G    G SREE++ D  +      L
Sbjct: 152 GYTIVWSGWQGDLKQSGAAIDGALGTRFPVVANKDGSAITGLSREEYIPDFHQGHKEFKL 211

Query: 181 TYPAHTL-DQNQATLTVRRN--NGETARRLDAMHWCFLSQWQIEIRV------------- 224
            YP  +L D++Q + TVR+   NG+  +   A     +++W  E +              
Sbjct: 212 AYPPASLRDKSQVSFTVRQTWRNGQGQQDYQAPS-APVTEWHYEPKADGSVSVVFTPPSA 270

Query: 225 ---PDGF----DGGAIFEFIYEAKDPVVMGLGLAAIRDFVSSLR-----SGGAANPL--- 269
              P G     D G+I+ F+Y A  P VM +G AA+RD VS LR     + GAANPL   
Sbjct: 271 VPGPAGTSVPADQGSIYSFVYPASHPRVMAIGFAAVRDLVSFLRDASADAKGAANPLNDM 330

Query: 270 RDAAGMPM----------IDHVLGFGTSQSGRVLRDFLWQDFNGDVTGQRVFDGLFIDAA 319
           +DAA +             D  +G G SQSGR +RDFL+  FN +  G +VFDG+     
Sbjct: 331 KDAACVSQQACTAHDKRNFDLTIGEGISQSGRFMRDFLYMGFNKNAQGNKVFDGMIAIIP 390

Query: 320 GSRKSFVNAVFGQPGRFSRQHEDHSYPGDQFPFSYAARPDPKSKSKSDSDRVDGILRACT 379
           G R++++N  F QPGR+S+ HE+H  PGDQFPF+Y    DP S         DG+L+ C+
Sbjct: 391 GGRRTWINERFSQPGRWSKGHEEHWMPGDQFPFAYNVMQDPVSGV------TDGLLKQCS 444

Query: 380 ASQTCPKIMHTDSSSEYWQARAALVTSDEDGVAIDIPESVRVYLYASVQH-GGPAAR--- 435
           AS TCPKIM  D S E+W  R ALV +D  G  + +P++VR YL +  QH GGP  +   
Sbjct: 445 ASMTCPKIMQIDGSFEWWGGRGALVVTDGAGKDLTLPDNVRYYLISGTQHAGGPGIKNGV 504

Query: 436 -----ATPICRYPINPLNDTPLHRALLVALEEWVTRNVAPPDSRVPRVADGTLVSIEQLV 490
                   +C++P +P+   P+ RA++ A+E W+ +   PP SR P V+DGT V+ +Q  
Sbjct: 505 VKQNGQDSMCQFPPSPVTQAPVLRAMIPAMENWLAKGQLPPPSRYPTVSDGTAVTPDQAS 564

Query: 491 QAFPAIPDCTVPRSG------------------NELASWDDSTLPPKETGARRYLPLVPS 532
             FPA+ +   P +                   N LA  D     P     R Y  LVP 
Sbjct: 565 VGFPALDNVLAPLANAAGTVRPTELHLSYSGIHNPLAVTDYRAAIPVADPTRPYRILVPK 624

Query: 533 TDADGNDQAGIRLPAVSVPVGTYTGWNIRRDGYAPGQLASVRGSFFPFAATKAERLANAD 592
            DADGN+  GI  P V+VP+ TYTGWN+R  G+A G+  S  GS  PFA + A R +++D
Sbjct: 625 VDADGNELGGIAQPEVAVPLATYTGWNLRAAGHAQGETCSSLGSAIPFAVSGATR-SSSD 683

Query: 593 PRPSIEERYPSRDAYVQAVSDATAALCGARLLLEEDALRMI-DEARQ 638
           PRP++++RY  R  Y   V  A   L     LL  DA  +    ARQ
Sbjct: 684 PRPALDQRYQGRADYAAQVKAAGDRLVQEGYLLPLDAEHIFAAHARQ 730


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,192,068
Number of extensions: 97962
Number of successful extensions: 267
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 556
Effective length of database: 1,188,985
Effective search space: 661075660
Effective search space used: 661075660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)