BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0126.p
         (362 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312181|ref|YP_003776273.1| coenzyme F420-dependent N5,N10-...    92   6e-20

>gi|300312181|ref|YP_003776273.1| coenzyme F420-dependent
           N5,N10-methylene tetrahydromethanopterin reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 333

 Score = 92.0 bits (227), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 104/202 (51%), Gaps = 8/202 (3%)

Query: 12  GIFDHIEKSSGSANIGDLYRERIAFVKHAESLGFWGYHLAEHHCTPLGVVPSPALFLASL 71
           G+F ++E   G+A   D   + +     AE+LG+    +AEHH +   +  +  + LA +
Sbjct: 9   GVFLNVENPHGNAR--DALLQTVDHAVVAEALGYHDVWVAEHHYSSFAIGSALMVLLAQI 66

Query: 72  ASHTSRIRLGPMVFLLPFYNPLRLMLEICMLDNMSDGRFEFGIGRG---VHPYEHAYYNI 128
           A+ TSRIRLG    LL   +PLR+  ++  LD +S+GR EFG+ RG      Y HA  + 
Sbjct: 67  AARTSRIRLGTGASLLALNDPLRVAEDVATLDLLSNGRMEFGVARGGPFPEQYRHAGLSG 126

Query: 129 PTLQSTEIFEEALDVILKGFTVDQLKHKGTHFRFDGVPVADMRPVQKPYPGLWYGAVKES 188
              Q+     EALDVI + +       +G  F +D V +   +P+Q+P P +W  ++ E 
Sbjct: 127 AD-QARARMIEALDVIQRAWQGVPFSTEGRFFHYDRVQL-QPQPLQRPIP-VWLASMSED 183

Query: 189 SVIYAAKRGLNICTNGPVEMNK 210
           S+  AA++   +      ++ +
Sbjct: 184 SLDLAARQDYGLMATPSADLEQ 205


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,135,976
Number of extensions: 47660
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 276
Effective length of database: 1,212,660
Effective search space: 334694160
Effective search space used: 334694160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)