BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0125.p
         (152 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311287|ref|YP_003775379.1| 6,7-dimethyl-8-ribityllumazine ...   202   1e-53

>gi|300311287|ref|YP_003775379.1| 6,7-dimethyl-8-ribityllumazine
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 169

 Score =  202 bits (513), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 102/140 (72%), Positives = 120/140 (85%)

Query: 1   VQSCWHKEIVDQCRIAFLEELAKAGISAADCDFFEVPGAFEIPLHAKLLAKSGNYAAVAC 60
           +Q+CWHK+IVDQCRIAF EE+AK G  AA  DFFE+PGAFEIPLHAK+LAK+G YA +  
Sbjct: 20  IQACWHKDIVDQCRIAFTEEMAKLGWPAASIDFFELPGAFEIPLHAKVLAKTGRYAGIVA 79

Query: 61  AGLVVDGGIYRHDFVAQAVISGLMQVQLETEVVVLSAVLTPHHFHAGSEHFNFFHEHFLV 120
           +GLVVDGGIYRHDFVAQ+VIS LMQVQL+TEV V SAVLTPHHFH+ SEH ++FH+HFLV
Sbjct: 80  SGLVVDGGIYRHDFVAQSVISALMQVQLDTEVPVFSAVLTPHHFHSHSEHHDYFHQHFLV 139

Query: 121 KGRELAQACLGTVGKVAALK 140
           KGRE AQAC  TV K+A ++
Sbjct: 140 KGREAAQACATTVAKLAQVR 159


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 449,912
Number of extensions: 16811
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 152
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 75
Effective length of database: 1,255,275
Effective search space: 94145625
Effective search space used: 94145625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)