BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0122.p (323 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310271|ref|YP_003774363.1| AraC family transcription regul... 89 3e-19 gi|300310261|ref|YP_003774353.1| nitrilase regulator protein [He... 62 7e-11 gi|300311835|ref|YP_003775927.1| AraC family ethanolamine operon... 56 4e-09 gi|300313797|ref|YP_003777889.1| AraC family transcription regul... 56 4e-09 >gi|300310271|ref|YP_003774363.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 350 Score = 89.4 bits (220), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 86/322 (26%), Positives = 144/322 (44%), Gaps = 31/322 (9%) Query: 9 TDDIAQAHRSQVWKAWL-STYVARDPDDLAASGISFSPGDSLGFRGCIEYGDLGEASLCR 67 T AQ R W+ L +V+ +P I + F G + L + R Sbjct: 6 TQSRAQNERFSYWREVLCEAFVSLNP-------ILNEKHTVIDFAGEVSSRSLSTTAQTR 58 Query: 68 VRNDACRYVRQPAQTQDTPGAAMIV-LQTRGTSVFRQGQRQDVLRPGDWSLYDTSHAFSI 126 V + A R+ + + P Q G+ V RQ ++ ++ PGD+S+ D++ + + Sbjct: 59 VFSKAQHIQRRGEEIRRNPVEYCFANFQLEGSCVVRQDGQESMVLPGDFSIVDSTRPYFL 118 Query: 127 ASEGESEHLVLLHPRS-AEPLLLTELGQLAARSFGRTGI----ERMVR--EQIS----SA 175 +G+ L PR L + A R G+ G+ R R EQ+ S Sbjct: 119 DYQGDWHVLSFRIPREQVISRLASPYKATARRVDGKAGMGLVASRFARSLEQVDLDMGSG 178 Query: 176 FRECHAMPLRTGNVVANSILQLVVSA-LEASSENPGGAAMGLRQRIVQFIDEHLSDEHLT 234 ++C + L NSI+ + + A LEA + +R + +I +HL + HL Sbjct: 179 VQDCLSAAL-------NSIIAIALGATLEAQERDRLPVREAIRLAVETYIRDHLEEPHLG 231 Query: 235 VARIAEAFGYSSRQIHRMFSDETGMTVAQYLWQRRLAQSLRDLQDSEQAGCTITEIAFRW 294 +A F S R ++ +F +E ++V+ + + RL +S RDL G + +A RW Sbjct: 232 PDMLASRFKVSRRTLYSLF-EEAPLSVSSLIRELRLQRSARDLLSPGHPG--VLAVALRW 288 Query: 295 GFSNAAHFSHAFKQAYGLSPRE 316 GFS+A+HFS FK+ +G+ PRE Sbjct: 289 GFSDASHFSRLFKRRFGVCPRE 310 >gi|300310261|ref|YP_003774353.1| nitrilase regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 61.6 bits (148), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 66/273 (24%), Positives = 115/273 (42%), Gaps = 18/273 (6%) Query: 51 FRGCIEYGDLGEASLCRVRNDACRYVRQPAQTQDTPGAAM-IVLQTRGTSVFRQGQRQDV 109 F G + +G + + + + R + P + + G + Q RQ Sbjct: 40 FDGAMSVNSIGMVDMAIMSSPLHHWRRDAHHIRSNPDDDLWLAFMVSGEAYLAQDGRQAR 99 Query: 110 LRPGDWSLYDTSHAFSIASEGESEHLVLLHPRSAEPLLLTELGQLAA-----RSFGRTGI 164 L+ GD +LYD + F A E +L L PR + E L A R G + Sbjct: 100 LQSGDMALYDGARPFEFALGPEKIYLTRL-PRKSLLSRCPEAEHLTAQLIDARRPGVMAL 158 Query: 165 ERMVREQISSAFRECHAMPLRTGNVVANSILQLVVSALEASSENPGGAAMGLRQRIVQFI 224 M+ E + F + + + ++ +L L ++A + L +R++ ++ Sbjct: 159 RSMLEEAGTCEFNDAESAVRYSAALL--DVLALSLAA--PGARTTAAEKNDLYKRVLAYL 214 Query: 225 DEHLSDEHLTVARIAEAFGYSSRQIHRMFS--DETGMTVAQYLWQRRLAQSLRDLQDSEQ 282 E+ +D L + +A A S R + R F+ ++T M V L + RL S R L +E Sbjct: 215 RENYTDPQLNLHVLAAAHHVSERTLTRAFAQHNQTPMDV---LRRVRLQASYRAL--TEG 269 Query: 283 AGCTITEIAFRWGFSNAAHFSHAFKQAYGLSPR 315 +T A GFS+ +HFS F+ A+G +P+ Sbjct: 270 NAGNVTTAALDAGFSDLSHFSRVFRAAFGCTPQ 302 >gi|300311835|ref|YP_003775927.1| AraC family ethanolamine operon transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 332 Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 61/127 (48%), Gaps = 7/127 (5%) Query: 194 ILQLVVSALEASSENPGGAAMGLRQRIV----QFIDEHLSDEHLTVARIAEAFGYSSRQI 249 ++ L+ E E GA+ R+RIV +F H D +TV + EA S R + Sbjct: 197 LVALLAMLDEGEIEAEAGASFLRRRRIVNDAREFAMAH-QDSPVTVPMLCEAVHVSRRTL 255 Query: 250 HRMFSDETGMTVAQYLWQRRLAQSLRDL--QDSEQAGCTITEIAFRWGFSNAAHFSHAFK 307 F D GM+ YL RL R L D QA +I +IA WGF+N + FS +K Sbjct: 256 QYCFEDVLGMSPMSYLRSLRLNGVRRALCHGDGRQAVGSIGDIAAAWGFANFSQFSCDYK 315 Query: 308 QAYGLSP 314 + +G +P Sbjct: 316 KLFGQTP 322 >gi|300313797|ref|YP_003777889.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 294 Score = 55.8 bits (133), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 4/96 (4%) Query: 219 RIVQFIDEHLSDEHLTVARIAEAFGYSSRQIHRMFSDETGMTVAQYLWQRRLAQSLRDLQ 278 R+ F+ HL+ + L++A IA G S R F G++ +L Q+R+A + R L Sbjct: 195 RVRDFMLSHLA-QRLSLAEIAAQSGLSRAHFSRAFKQSFGLSPHAWLQQQRIALACRLLH 253 Query: 279 DSEQAGCTITEIAFRWGFSNAAHFSHAFKQAYGLSP 314 + G ++T IA GFS+ +HFS FKQ G+ P Sbjct: 254 E---GGKSMTTIALECGFSDQSHFSRVFKQVQGMGP 286 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.132 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,008,576 Number of extensions: 39972 Number of successful extensions: 169 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 179 Number of HSP's successfully gapped: 5 Length of query: 323 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 238 Effective length of database: 1,217,395 Effective search space: 289740010 Effective search space used: 289740010 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)