BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0119.p (527 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313232|ref|YP_003777324.1| 3-(3-hydroxyphenyl) propionate ... 268 8e-73 gi|300309878|ref|YP_003773970.1| 2-polyprenyl-6-methoxyphenol hy... 137 1e-33 gi|300310882|ref|YP_003774974.1| 2-polyprenyl-6-methoxyphenol hy... 106 6e-24 >gi|300313232|ref|YP_003777324.1| 3-(3-hydroxyphenyl) propionate hydroxylase [Herbaspirillum seropedicae SmR1] Length = 544 Score = 268 bits (685), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 147/331 (44%), Positives = 203/331 (61%), Gaps = 7/331 (2%) Query: 5 QTHSVDILIVGAGPTGLTLANILGQAGIRTLIIDRKPSTVAEPRAVSIDDESLRTMQFIG 64 Q +LIVGAGP G+TL N+LG GI TL+I+R + PRAV IDDE+LRT Q G Sbjct: 13 QVMQAQVLIVGAGPVGVTLGNLLGTYGISTLLIERNLDVLDYPRAVGIDDEALRTFQSAG 72 Query: 65 LDQQVLKDVVLGYGVHYFTRPGGYCFGKVEPTRSEYGFPRRNAFRQPLFEATLRQGAQRF 124 + +++DV+ + +T CF +++PT E+G+ RRN F QPL EATLR G +RF Sbjct: 73 MADAIVRDVIQNVPMRMYT-ADRRCFAEIQPTTREFGWYRRNLFSQPLGEATLRLGLRRF 131 Query: 125 AALDMRFGHELESFSQADGQVQALIRDVAGQPLKVSARYLVACDGGRSPVR-TLLDIPMS 183 + +R G EL Q + VQA I D G + A+Y+V CDGGRS VR +L +P Sbjct: 132 EHVSLRSGVELLDLVQDEAGVQASIIDEHGAQATLRAQYVVGCDGGRSTVREKILKLPYE 191 Query: 184 GATFKSRWIVLDTEND--DDPFWQTRVYCDARRPIVEVPGPHRTRRFEVMIHPHEDAEAM 241 G T ++W+V++ + D D P+ T ++C+ +RP V + P+ RR+E M+ P ED E M Sbjct: 192 GKTHPAKWVVIECDGDPLDAPY--TALHCEPQRPYVCLALPYGVRRWEFMLFPGEDGEQM 249 Query: 242 LQDECISEFLRP-FRGDKPTTIVRKVVYTFHARMAERWRIGNVFLAGDAAHLTPPYAGQG 300 L E + E LR R I+R VYT ++R+A G + LAGDAAH+TPP+ GQG Sbjct: 250 LAPEKVRELLREHVRDVDALNIIRARVYTHNSRVAGSLVCGRICLAGDAAHITPPWIGQG 309 Query: 301 MNSGIRDAHNLGWKLAEVIAGRLPDAALDSY 331 +N+G+RDA NL WKLA V+ GR+ L SY Sbjct: 310 LNAGLRDAFNLAWKLAWVLQGRMKPELLASY 340 >gi|300309878|ref|YP_003773970.1| 2-polyprenyl-6-methoxyphenol hydroxylase [Herbaspirillum seropedicae SmR1] Length = 589 Score = 137 bits (346), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 98/330 (29%), Positives = 160/330 (48%), Gaps = 11/330 (3%) Query: 11 ILIVGAGPTGLTLANILGQAGIRTLIIDRKPSTVAEPRAVSIDDESLRTMQFIGLDQQVL 70 ++I+GAGP GL A L + GI +++D + RA+ +L IG Q+++ Sbjct: 33 VVIIGAGPVGLACAIDLARQGIAVVLVDDDDTLSTGSRAICFAKRTLDIFDRIGCGQRMV 92 Query: 71 -KDVVLGYGVHYFTRPGGYCFGKVEPTRSEYGFPRRNAFRQPLFEATLRQGAQRFAALDM 129 K V G + Y F + S + P +Q E L + AQ++ +++ Sbjct: 93 DKGVGWNRGKVFLRDQAVYEFDLL--PESGHARPAFINLQQYYVEGYLLEQAQQWPHIEI 150 Query: 130 RFGHELESFSQADGQVQALIRDVAGQPLKVSARYLVACDGGRSPVRTLLDIPMSGATFKS 189 R+ +++ + + + +AL D + ARY+VA DG RSP+R ++ + G TF+ Sbjct: 151 RWKNKVSAIAHHEDH-EALTVDTPQGSYTLKARYVVAADGSRSPLRKMMGLESQGHTFRD 209 Query: 190 RWIVLDTENDDDPFWQTRVYC-----DARRPIVEVPGPHRTRRFEVMIHPHEDAEAMLQD 244 R+++ D + D PF R + ++ ++ P R + + D Sbjct: 210 RFLIADVKMDA-PFPAERWFWFDPPFHPQQSVLLHRQPDDVWRIDFQLGWDADPVLEKTP 268 Query: 245 ECISEFLRPFRGDKPTTIVRKV-VYTFHARMAERWRIGNVFLAGDAAHLTPPYAGQGMNS 303 E + +R G++ + + V VYTF ER+R G V GDAAH P+ +G NS Sbjct: 269 ERVIPRVRALLGEEVSFSLEWVSVYTFSCVRMERFRHGRVLFVGDAAHCVSPFGARGANS 328 Query: 304 GIRDAHNLGWKLAEVIAGRLPDAALDSYES 333 GI+DA NL WKLA V+ G+ PD+ LDSY S Sbjct: 329 GIQDAENLAWKLAHVLQGKAPDSLLDSYAS 358 >gi|300310882|ref|YP_003774974.1| 2-polyprenyl-6-methoxyphenol hydroxylase [Herbaspirillum seropedicae SmR1] Length = 547 Score = 106 bits (264), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 87/338 (25%), Positives = 142/338 (42%), Gaps = 31/338 (9%) Query: 11 ILIVGAGPTGLTLANILGQAGIRTLIIDRKPSTVAEPRAVSIDDESLRTMQFIGL-DQQV 69 ++++GAGP GLT A G+ +++D + RAV L +G+ + V Sbjct: 28 VVVIGAGPIGLTAALECAARGLPVVVLDDNDTVSIGSRAVCYAKRPLEIWDRLGVAPRMV 87 Query: 70 LKDVVLGYGVHYFTRPGGYCFGKVEPTRSEYGFPRRNAFRQPLFEATLRQGAQRFAALDM 129 K V G +F Y F + + P +Q E L + Q +D+ Sbjct: 88 EKGVSWKLGKVFFEEREVYRFDLL--PEHAHKMPAMINLQQYYLEQYLVEACQAQPLIDL 145 Query: 130 RFGHELESFSQADGQVQALIRDVAGQPLKVSARYLVACDGGRSPVRTLLDIPMSGATFKS 189 R+ H++ S Q D + G ++ A +++ACDG S R ++ SG F+ Sbjct: 146 RWKHKMISLHQDDTHATLDVETPDGI-FRMEADWVIACDGANSDTRKMVGAEFSGQFFQD 204 Query: 190 RWIVLDTENDDDPFWQTRVYCDARRPIVEVPGPHRTRRFEVMIHPHEDAEAMLQDECISE 249 R+++ D D + + D P HR + V++H D + + E Sbjct: 205 RFLIADVIMKADFPAERWFWFD--------PPFHRGQ--SVLLHKQCDNVWRIDFQLGWE 254 Query: 250 FLRPFRGDKPTTIVRKV----------------VYTFHARMAERWRIGNVFLAGDAAHLT 293 P KP ++ ++ VY F R ++ R V AGDAAH Sbjct: 255 -ADPEEEKKPEKVIPRIQAMLGKEVEFELEWVSVYQFACRRIDKMRYQRVLFAGDAAHQV 313 Query: 294 PPYAGQGMNSGIRDAHNLGWKLAEVIAGRLPDAALDSY 331 P+ +G N+G++D NL WKL VI G+ P + +DSY Sbjct: 314 SPFGARGANTGVQDIDNLVWKLKLVIDGKAPPSFIDSY 351 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,540,917 Number of extensions: 61994 Number of successful extensions: 238 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 232 Number of HSP's successfully gapped: 4 Length of query: 527 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 437 Effective length of database: 1,193,720 Effective search space: 521655640 Effective search space used: 521655640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)