BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0109.p (254 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310796|ref|YP_003774888.1| hypothetical protein Hsero_1464... 518 e-148 gi|300311003|ref|YP_003775095.1| hypothetical protein Hsero_1674... 225 2e-60 gi|300312218|ref|YP_003776310.1| hypothetical protein Hsero_2913... 156 1e-39 >gi|300310796|ref|YP_003774888.1| hypothetical protein Hsero_1464 [Herbaspirillum seropedicae SmR1] Length = 254 Score = 518 bits (1334), Expect = e-148, Method: Compositional matrix adjust. Identities = 252/254 (99%), Positives = 252/254 (99%) Query: 1 MPETIEITPNQSGKALLARYPHQIKLLNRPPNVNFYSLDWPRNALGTVQVKTGNHVAVIK 60 MPETIEITPNQSGKALLARYPHQIKLLNRPPNVNFYSLDWPRNALGTVQVKTGNHVAVIK Sbjct: 1 MPETIEITPNQSGKALLARYPHQIKLLNRPPNVNFYSLDWPRNALGTVQVKTGNHVAVIK 60 Query: 61 DVLGISGSDDPNFASEDIVEWHVYASLATEEEIPHDLARQRFLALLQEIRKAGWQRYVGR 120 DVLGISGSDDPNFASEDIVEWHVYA LATEEEIPHDLARQRFLALLQEIRKAGWQRYVGR Sbjct: 61 DVLGISGSDDPNFASEDIVEWHVYAGLATEEEIPHDLARQRFLALLQEIRKAGWQRYVGR 120 Query: 121 GHPRLKGSTALRYALSSRTYALDPDYPLSLQEWMSMPDDTMWRFQLENAYLMLTLTRDPQ 180 GHPRLKGSTALRYALSSRTYALDPDYPLSLQEWMSMPDDTMWRFQLENAYLMLTLTRDPQ Sbjct: 121 GHPRLKGSTALRYALSSRTYALDPDYPLSLQEWMSMPDDTMWRFQLENAYLMLTLTRDPQ 180 Query: 181 RKDVNKKGAYFVKLSLNGANEEARRIVGPARRADWQAALPEELKSLKQDRERAEQVLRQQ 240 RKDVNKKGAYFVKLSLNGANEEARRIVGPARRADWQAALPEELK LKQDRERAEQVLRQQ Sbjct: 181 RKDVNKKGAYFVKLSLNGANEEARRIVGPARRADWQAALPEELKLLKQDRERAEQVLRQQ 240 Query: 241 GVAIDESYQDPKLP 254 GVAIDESYQDPKLP Sbjct: 241 GVAIDESYQDPKLP 254 >gi|300311003|ref|YP_003775095.1| hypothetical protein Hsero_1674 [Herbaspirillum seropedicae SmR1] Length = 259 Score = 225 bits (574), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 108/255 (42%), Positives = 156/255 (61%), Gaps = 1/255 (0%) Query: 1 MPETIEITPNQSGKALLARYPHQIKLLNRPPNVNFYSLDWPRNALGTVQVKTGNHVAVIK 60 M +EI NQSG L+ +YP Q ++ P + FY+ DW G+V + T H + Sbjct: 1 MTAPVEIRVNQSGVDLVKKYPDQFEITKYPQGIQFYAADWGSVPNGSVVLATSAHNVTLP 60 Query: 61 DVLGISGSDDPNFASEDIVEWHVYASLATEEEIPHDLARQRFLALLQEIRKAGWQRYVGR 120 +L +G+DDPNFASE+I+ W++ A + + I HD AR+RF LLQ +R AGW R + Sbjct: 61 YILSATGNDDPNFASENIINWNINAGITEADVIAHDDARKRFFGLLQSLRNAGWVRAIRL 120 Query: 121 GHPRLKGSTALRYALSSR-TYALDPDYPLSLQEWMSMPDDTMWRFQLENAYLMLTLTRDP 179 PRLKG AL Y Y+LDPDY LSL++WM++ W ++AYL +++TRDP Sbjct: 121 SEPRLKGKQALDYRQKENPIYSLDPDYVLSLEQWMTLDTRATWSLYSDHAYLDVSITRDP 180 Query: 180 QRKDVNKKGAYFVKLSLNGANEEARRIVGPARRADWQAALPEELKSLKQDRERAEQVLRQ 239 + DV K GAYFV+ +L NE+ R +VGP +R W+ LP L L + R+ AE+ L++ Sbjct: 181 SKTDVTKPGAYFVEYALKSDNEKWRSVVGPTKRLHWKTELPAVLPQLAKSRQAAEETLKK 240 Query: 240 QGVAIDESYQDPKLP 254 + + IDE+Y+DP LP Sbjct: 241 ENITIDETYRDPPLP 255 >gi|300312218|ref|YP_003776310.1| hypothetical protein Hsero_2913 [Herbaspirillum seropedicae SmR1] Length = 284 Score = 156 bits (395), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 86/255 (33%), Positives = 126/255 (49%), Gaps = 1/255 (0%) Query: 1 MPETIEITPNQSGKALLARYPHQIKLLNRPPNVNFYSLDWPRNALGTVQVKTGNHVAVIK 60 MP +I I N+ KA + + P IK++ +P +NFY + W LG V + G I Sbjct: 28 MPSSIAIRANEPSKAFIDQAPSAIKVIKQPAGINFYLMQWGGAQLGDVHIHHGAASVQIP 87 Query: 61 DVLGISGSDDPNFASEDIVEWHVYASLATEEEIPHDLARQRFLALLQEIRKAGWQRYVGR 120 DV + G +D F E I W +Y L++ + H+ AR + A+L + K W+ + Sbjct: 88 DVRVLQGEEDAQFPEEHIANWKIYIGLSSGSVMSHEQARNKIYAILAALEKKAWRVLIDP 147 Query: 121 GHPRLKGSTALRYALS-SRTYALDPDYPLSLQEWMSMPDDTMWRFQLENAYLMLTLTRDP 179 PRL G Y S L+ DY +L EWM + D + W F + +L +T+ RD Sbjct: 148 DDPRLTGKERFDYVTGQSPASGLNIDYVPTLDEWMRLEDLSHWSFYADGVFLTVTMQRDQ 207 Query: 180 QRKDVNKKGAYFVKLSLNGANEEARRIVGPARRADWQAALPEELKSLKQDRERAEQVLRQ 239 DV++ G Y + L+L G NE R V P R +W+ LP K+L + R + E Sbjct: 208 GALDVSRPGHYILVLNLMGENEGFRAFVPPKARTNWRNELPSLWKALNERRTQREAQALV 267 Query: 240 QGVAIDESYQDPKLP 254 G I+ SYQDP LP Sbjct: 268 AGKKINTSYQDPPLP 282 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.133 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 847,180 Number of extensions: 35241 Number of successful extensions: 111 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 109 Number of HSP's successfully gapped: 3 Length of query: 254 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 171 Effective length of database: 1,226,865 Effective search space: 209793915 Effective search space used: 209793915 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)