BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0105.p (542 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis tra... 1073 0.0 gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis tra... 482 e-137 gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 399 e-112 gi|300313926|ref|YP_003778018.1| methyl-accepting chemotaxis tra... 373 e-104 gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra... 354 1e-98 >gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 1073 bits (2775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 539/542 (99%), Positives = 539/542 (99%) Query: 1 MNKLKVSTRLALGFASVVVLLVVISLVGLWGMATVKGNLSDIVANNQQGGLADVMNNSVR 60 MNKLKVSTRLALGFASVVVLLVVISLVGLWGMATVKGNLSDIVANNQQGGLADVMNNSVR Sbjct: 1 MNKLKVSTRLALGFASVVVLLVVISLVGLWGMATVKGNLSDIVANNQQGGLADVMNNSVR 60 Query: 61 IRALAIRNIALFQEPALIAREIERIKVQEKAYQDAREKLGKMFDQPDTTRREHELFDLIA 120 IRALAIRNIALFQEPALIAREIERIKVQEKAYQDAREKLGKMFDQPDTTRREHELFDLIA Sbjct: 61 IRALAIRNIALFQEPALIAREIERIKVQEKAYQDAREKLGKMFDQPDTTRREHELFDLIA 120 Query: 121 QNAADTEPLMNQAVTLAQQDKSAELISLLTQKIRPVQAKWLDNLDELGRFEDELNNQASA 180 QNAADTEPLMNQAVTLAQQDKSAELISLLTQKIRPVQAKWLDNLDELGRFEDELNNQASA Sbjct: 121 QNAADTEPLMNQAVTLAQQDKSAELISLLTQKIRPVQAKWLDNLDELGRFEDELNNQASA 180 Query: 181 AADTTYRSILTTTWTLVAGSVLLAVAAAVLIVRSVLHQLGGEPAQAQELAAQIAQGNLAV 240 AADTTYRSILTTTWTLVAGSVLLAVAAA LIVRSVLHQLGGEPAQAQELAAQIAQGNLAV Sbjct: 181 AADTTYRSILTTTWTLVAGSVLLAVAAAFLIVRSVLHQLGGEPAQAQELAAQIAQGNLAV 240 Query: 241 SIPLAKGDQHSLMASLENMRAQLTRIVDGIKHSAESISTAASQIAVGNLDLSRRTEEQAA 300 SIPLAKGDQHSLMASLENMRAQLTRIVDGIKHSAESISTAASQIAVGNLDLSRRTEEQAA Sbjct: 241 SIPLAKGDQHSLMASLENMRAQLTRIVDGIKHSAESISTAASQIAVGNLDLSRRTEEQAA 300 Query: 301 SLEETASSMEEITSTVEQNTQNAGQGHQLARSASLHAQKGGEVVERVVGTMKDISQSAYK 360 SLEETASSMEEITSTVEQNTQNAGQGHQLARSASLHAQKGGEVVERVVGTMKDISQSAYK Sbjct: 301 SLEETASSMEEITSTVEQNTQNAGQGHQLARSASLHAQKGGEVVERVVGTMKDISQSAYK 360 Query: 361 ITEIIATVEGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASSAKEIRGL 420 ITEIIATVEGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASSAKEIRGL Sbjct: 361 ITEIIATVEGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASSAKEIRGL 420 Query: 421 IESSVQHVEAGQKLVDEAGLTMDEVVRSIQQVNDLMSEITAASNEQSSGISQINIAISQM 480 IESSVQHVEAGQKLVDEAGLTMDEVVRSIQQVNDLMSEITAASNEQSSGISQINIAISQM Sbjct: 421 IESSVQHVEAGQKLVDEAGLTMDEVVRSIQQVNDLMSEITAASNEQSSGISQINIAISQM 480 Query: 481 DEVTQQNAALVEESASAAQSMAQQANSQRDAVAVFRIEQPQPAVAYPREQVIHPTMGLLS 540 DEVTQQNAALVEESASAAQSMAQQANS RDAVAVFRIEQPQPAVAYPREQVIHP MGLLS Sbjct: 481 DEVTQQNAALVEESASAAQSMAQQANSLRDAVAVFRIEQPQPAVAYPREQVIHPAMGLLS 540 Query: 541 AA 542 AA Sbjct: 541 AA 542 >gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 547 Score = 482 bits (1240), Expect = e-137, Method: Compositional matrix adjust. Identities = 278/532 (52%), Positives = 371/532 (69%), Gaps = 3/532 (0%) Query: 1 MNKLKVSTRLALGFASVVVLLVVISLVGLWGMATVKGNLSDIV-ANNQQGGLADVMNNSV 59 M LKV TRLALGF ++V L+ IS +GL+GMA V L+DI NN + L + N++ Sbjct: 1 MGNLKVVTRLALGFGLILVFLLSISALGLYGMARVNDALTDITDVNNAEIKLVTALRNAL 60 Query: 60 RIRALAIRNIALFQEPALIAREIERIKVQEKAYQDAREKLGKMFD-QPDTTRREHELFDL 118 RALAIRNIAL E A + E + + QEK Y DA L KMF + TT RE +L Sbjct: 61 SQRALAIRNIALLDEQADMQVESQTLARQEKLYADAYAALDKMFTTEAATTERERQLLVQ 120 Query: 119 IAQNAADTEPLMNQAVTLAQQDKSAELISLLTQKIRPVQAKWLDNLDELGRFEDELNNQA 178 I + A T PLM +AV L ++K+AE +L ++RP Q W+ +L EL FED+LN++A Sbjct: 121 IKNDEAATLPLMAKAVQLGLENKAAEAGKMLITQVRPKQQAWIKSLTELAEFEDQLNDEA 180 Query: 179 SAAADTTYRSILTTTWTLVAGSVLLAVAAAVLIVRSVLHQLGGEPAQAQELAAQIAQGNL 238 + +A TY + T ++L+ VAA+ LI RS+L QLG EP++AQ +A IA G+L Sbjct: 181 ATSARNTYAWLRMVTVAAALAALLVGVAASALIARSILRQLGAEPSEAQAVARDIASGDL 240 Query: 239 AVSIPLAKGDQHSLMASLENMRAQLTRIVDGIKHSAESISTAASQIAVGNLDLSRRTEEQ 298 ++ + +GD SLMAS+E MR QL I GIK +AE+IS A+ QIA GN DLS+RTEEQ Sbjct: 241 TATVRVREGDSSSLMASIEQMRYQLNVIAHGIKSAAETISVASGQIAQGNFDLSQRTEEQ 300 Query: 299 AASLEETASSMEEITSTVEQNTQNAGQGHQLARSASLHAQKGGEVVERVVGTMKDISQSA 358 AASLEETA+SMEE+T+TV QNTQ+A + +L+ A+ A G + +RVV TM I+ S+ Sbjct: 301 AASLEETAASMEELTTTVRQNTQHASEALRLSGGATETAAAGSQAFDRVVQTMDRITASS 360 Query: 359 YKITEIIATVEGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASSAKEIR 418 K+++II+ +EGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA +AKEI+ Sbjct: 361 SKMSDIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVAAKEIK 420 Query: 419 GLIESSVQHVEAGQKLVDEAGLTMDEVVRSIQQVNDLMSEITAASNEQSSGISQINIAIS 478 LI S+ HV AG +LV +AG M ++V S+Q+ ++M+ I A+ EQ SGI QIN A+ Sbjct: 421 ELIGESMSHVGAGSQLVSDAGQQMAQIVASVQRFGEIMNNIATATQEQGSGIEQINTAMV 480 Query: 479 QMDEVTQQNAALVEESASAAQSMAQQANSQRDAVAVFRIEQPQPAVAYPREQ 530 QMD+VTQQNAALVEE+++AAQS++QQA+ V+VF+I Q + ++A P EQ Sbjct: 481 QMDQVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKIRQDR-SLAAPLEQ 531 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 399 bits (1026), Expect = e-112, Method: Compositional matrix adjust. Identities = 248/520 (47%), Positives = 353/520 (67%), Gaps = 2/520 (0%) Query: 4 LKVSTRLALGFASVVVLLVVISLVGLWGMATVKGNLSDIV-ANNQQGGLADVMNNSVRIR 62 +K+ TRL LGFA VV+LLV+++ G++ M V+G + +V N + L M +V R Sbjct: 5 MKMGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESALVKEMLETVGER 64 Query: 63 ALAIRNIALFQEPALIAREIERIKVQEKAYQDAREKLGKMF-DQPDTTRREHELFDLIAQ 121 ++++RN+ L P + E + I+ Q Y+ A +KL ++F + DT+ E IA Sbjct: 65 SISLRNLMLPAAPEDVDIEAQYIEAQSLKYKMAAQKLQQLFAESSDTSDEEKAALPKIAA 124 Query: 122 NAADTEPLMNQAVTLAQQDKSAELISLLTQKIRPVQAKWLDNLDELGRFEDELNNQASAA 181 A+ E L+N+AV ++ ++ EL L ++ PVQ W L L ED+LN +A+ A Sbjct: 125 QASKAEKLINEAVEFGKRREAYELAQFLKEQYLPVQKSWQVELKALAALEDQLNKEAAEA 184 Query: 182 ADTTYRSILTTTWTLVAGSVLLAVAAAVLIVRSVLHQLGGEPAQAQELAAQIAQGNLAVS 241 + Y + A V+ AV AA + R +L +LGGEP A ++A QIA+G+LAV Sbjct: 185 SAVAYSRARMLMLLISAIGVVTAVLAAFWLTRHLLRKLGGEPDYAVQIAGQIAEGDLAVV 244 Query: 242 IPLAKGDQHSLMASLENMRAQLTRIVDGIKHSAESISTAASQIAVGNLDLSRRTEEQAAS 301 I GD SLMA++ MR +L IV ++ +E+I+TA+S+IA GNLDLS RTE+QA + Sbjct: 245 IDTRAGDHDSLMAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGNLDLSGRTEQQAGA 304 Query: 302 LEETASSMEEITSTVEQNTQNAGQGHQLARSASLHAQKGGEVVERVVGTMKDISQSAYKI 361 LEETASSME++ STV+QN +NA Q + LA +AS A +GG +V +VV TM+ I+ S+ K+ Sbjct: 305 LEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVQTMQSINASSQKV 364 Query: 362 TEIIATVEGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASSAKEIRGLI 421 +I++ ++GIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSAS+AKEI+ LI Sbjct: 365 ADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKVLI 424 Query: 422 ESSVQHVEAGQKLVDEAGLTMDEVVRSIQQVNDLMSEITAASNEQSSGISQINIAISQMD 481 SV VE G KLV++AG TM ++V SI++V D+M+EI A+ EQSSGI Q+N AI Q+D Sbjct: 425 GDSVGKVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGIEQVNEAIIQID 484 Query: 482 EVTQQNAALVEESASAAQSMAQQANSQRDAVAVFRIEQPQ 521 ++TQQNAALVE++A+AA+S+ +QA + V+VFR++ Q Sbjct: 485 DMTQQNAALVEQAAAAARSLQEQAAGLQQLVSVFRLDAAQ 524 >gi|300313926|ref|YP_003778018.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 582 Score = 373 bits (958), Expect = e-104, Method: Compositional matrix adjust. Identities = 262/559 (46%), Positives = 343/559 (61%), Gaps = 54/559 (9%) Query: 4 LKVSTRLALGFASVVVLLVVISLVGLWGMATVKGNLSDIVANN----QQGGLADVM---- 55 + V +L L F VVV+ +V S + L L D A N Q G AD M Sbjct: 5 MTVGRKLGLAFLCVVVVALVGSSLSLLNF----NRLEDASAMNIHTYQVMGKADDMLLNM 60 Query: 56 -NNSVRIRALAIRNIALFQEPALIAREIERIKVQEKAYQDAREKLGKMFDQPDTTRREHE 114 N IR F +P R+ ++ A+ DA+ D P +R E Sbjct: 61 VNIETGIRGYVASGNEAFLDPYKGGRKDFKV-----AFDDAKSLTA---DNPVQQKRLAE 112 Query: 115 LFDL------IAQNAADTEPLMN--------QAVTLAQQDKSAELISLLTQKIRPVQAKW 160 + +L I QN N Q A DK + + R VQ ++ Sbjct: 113 MQELSNKIEEIDQNLIKLRKEANASGSQQALQTYFGATHDK------IFMDRFRVVQKEF 166 Query: 161 LDNLDELGRFEDELNNQASAAADTTYRSILTTTWTLVAGSVLLAVAAAVLIVRSVLHQLG 220 +D + L + EL S +S L A +VLLA+ A +LI RS+++ LG Sbjct: 167 VDAEESLLKERGELVRSLS-------KSTLIVMIAAGALTVLLAIGAGLLITRSIINALG 219 Query: 221 GEPAQAQELAAQIAQGNLAVSIPLAKGDQHSLMASLENMRAQLTRIVDGIKHSAESISTA 280 GEP A ++A QIA G+L V++PL D HSLMASL +MR QLT IV GI+ S ESIS A Sbjct: 220 GEPGAAADVAQQIAAGDLTVAVPLKPNDSHSLMASLGSMREQLTTIVRGIQTSGESISVA 279 Query: 281 ASQIAVGNLDLSRRTEEQAASLEETASSMEEITSTVEQNTQNAGQGHQLARSASLHAQKG 340 A++IA GN DLS+RTEEQAASLEETASSMEE+TSTV QN+ NA Q + LA +AS A KG Sbjct: 280 ANEIATGNTDLSQRTEEQAASLEETASSMEELTSTVRQNSDNARQANTLAENASTLAAKG 339 Query: 341 GEVVERVVGTMKDISQSAYKITEIIATVEGIAFQTNILALNAAVEAARAGEQGRGFAVVA 400 GEVV RV+ TM +IS S+ K+++II +EGIAFQTNILALNAAVEAARAGEQGRGFAVVA Sbjct: 340 GEVVSRVIDTMNEISDSSSKVSDIITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVA 399 Query: 401 TEVRSLAQRSASSAKEIRGLIESSVQHVEAGQKLVDEAGLTMDEVVRSIQQVNDLMSEIT 460 +EVRSLAQRSA++AK+++ LI S + VE G LV EAG T++EVV++++ V D+M+EIT Sbjct: 400 SEVRSLAQRSAAAAKDVKDLITLSGERVERGTHLVGEAGQTINEVVQAVRNVTDIMNEIT 459 Query: 461 AASNEQSSGISQINIAISQMDEVTQQNAALVEESASAAQSMAQQANSQRDAVAVFRIE-- 518 AAS+EQ++GI Q+N A+SQMD+VTQQNAALVE++A+AAQ+M++QA R AV VF+ Sbjct: 460 AASSEQTTGIEQVNQALSQMDQVTQQNAALVEQAAAAAQAMSEQATELRSAVGVFKTGGG 519 Query: 519 ---QPQPAVAYPREQVIHP 534 QP+P P +V++P Sbjct: 520 TAVQPRPVSPRP-AKVVNP 537 >gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 354 bits (908), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 226/524 (43%), Positives = 330/524 (62%), Gaps = 12/524 (2%) Query: 1 MNKLKVSTRLALGFASVVVLLVVISLVGLWGMATVKGNLSDIVANNQQGGLADVM--NNS 58 +K+ T+LALGF ++VVL +++S + L + + ++ ++A Q LA + + Sbjct: 2 FKHMKIGTKLALGFGALVVLTILVSGISLSSIRALTSSIKAVLAVQDQK-LAPLYAAREA 60 Query: 59 VRIRALAIRNIALFQEPALIAREIERIKVQEKAYQDAREKLGKMFDQPDTTRREHELFDL 118 + +A RN +F+ A +E+ + Q++ Y A + LG +F ++ F+ Sbjct: 61 LDQTGIAARNAYVFRSDADAQKELAIVDEQKQLYLKAIKDLGPLF-------AGNKEFEK 113 Query: 119 IAQNAADTEPLMNQAVTLAQQDKSAELISLLTQKIRPVQAKWLDNLDE-LGRFEDELNNQ 177 + + + + +S E L + P++ + + ++ L + E E NN+ Sbjct: 114 VRSGMLQMAEELKRPRLYRESGRSEEYRDFLVNECSPLRRQIVSDIGTVLAQVEAE-NNR 172 Query: 178 ASAAADTTYRSILTTTWTLVAGSVLLAVAAAVLIVRSVLHQLGGEPAQAQELAAQIAQGN 237 A A D + T L V++++ AVL+ R +L QLGGEP A ++A QIA G+ Sbjct: 173 AQDATDKMAQLAALTVAVLTLVVVVISILIAVLLTRGLLKQLGGEPTYAAQIAQQIADGD 232 Query: 238 LAVSIPLAKGDQHSLMASLENMRAQLTRIVDGIKHSAESISTAASQIAVGNLDLSRRTEE 297 L ++ GD SL+ +++NMR L IV ++ +I A+S+IA GNLDLS RTE+ Sbjct: 233 LTANVQTKTGDNSSLLFAIKNMRDSLVSIVAQVRQGTFTIEQASSEIASGNLDLSSRTEQ 292 Query: 298 QAASLEETASSMEEITSTVEQNTQNAGQGHQLARSASLHAQKGGEVVERVVGTMKDISQS 357 QA+SLEETAS+MEE+ +TV+QN NA Q QLA SAS A +GGEVV +VV TM I+ S Sbjct: 293 QASSLEETASAMEELMTTVKQNADNAKQASQLAVSASEVASQGGEVVAQVVTTMDGINAS 352 Query: 358 AYKITEIIATVEGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASSAKEI 417 + KI +II+ ++GIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA++AKEI Sbjct: 353 SRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEI 412 Query: 418 RGLIESSVQHVEAGQKLVDEAGLTMDEVVRSIQQVNDLMSEITAASNEQSSGISQINIAI 477 LI SV +E G LV++AG TM+ VV S+++V D+++EI+ AS EQS GI+Q+N AI Sbjct: 413 TELINDSVSQIERGSSLVEQAGQTMENVVNSVKRVTDVVAEISMASQEQSHGITQVNTAI 472 Query: 478 SQMDEVTQQNAALVEESASAAQSMAQQANSQRDAVAVFRIEQPQ 521 + MDE TQQN+ALVEE+A+AA SM +QA + VA FR++ Q Sbjct: 473 THMDEATQQNSALVEEAAAAANSMKEQAGALSGLVATFRLDAQQ 516 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.125 0.322 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,130,923 Number of extensions: 36181 Number of successful extensions: 522 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 242 Number of HSP's successfully gapped: 72 Length of query: 542 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 452 Effective length of database: 1,193,720 Effective search space: 539561440 Effective search space used: 539561440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)