BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0097.p
         (162 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310781|ref|YP_003774873.1| DNA polymerase III subunit chi ...   285   1e-78

>gi|300310781|ref|YP_003774873.1| DNA polymerase III subunit chi
           [Herbaspirillum seropedicae SmR1]
          Length = 139

 Score =  285 bits (728), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 138/139 (99%), Positives = 138/139 (99%)

Query: 24  MTRIDFHSNVPQKIAYVCRLVRKARATGVNIVVRSPDAAQLQQLDQALWSFSEQDFLPHV 83
           MTRIDFHSNVPQKI YVCRLVRKARATGVNIVVRSPDAAQLQQLDQALWSFSEQDFLPHV
Sbjct: 1   MTRIDFHSNVPQKITYVCRLVRKARATGVNIVVRSPDAAQLQQLDQALWSFSEQDFLPHV 60

Query: 84  MAKDPLAAQTAIILTSDDAAELPHHQLLINLGADTPAHFARFERLLEIISADDADKAAGR 143
           MAKDPLAAQTAIILTSDDAAELPHHQLLINLGADTPAHFARFERLLEIISADDADKAAGR
Sbjct: 61  MAKDPLAAQTAIILTSDDAAELPHHQLLINLGADTPAHFARFERLLEIISADDADKAAGR 120

Query: 144 DRYRFYKERGYPLTHHVAA 162
           DRYRFYKERGYPLTHHVAA
Sbjct: 121 DRYRFYKERGYPLTHHVAA 139


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 399,963
Number of extensions: 11967
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 84
Effective length of database: 1,250,540
Effective search space: 105045360
Effective search space used: 105045360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)