BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0090.p
         (774 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310774|ref|YP_003774866.1| anaerobic formate dehydrogenase...   315   1e-86
gi|300311015|ref|YP_003775107.1| anaerobic (selenocysteine-conta...   147   3e-36

>gi|300310774|ref|YP_003774866.1| anaerobic formate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 790

 Score =  315 bits (807), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 144/147 (97%), Positives = 145/147 (98%)

Query: 1   MKTKDIPEDATFDEYNNAAGGWGSVKALGSILQQEHVIASGTRILMHQNKPEGFACVSCS 60
           MKTKDIPEDATFDEYNNAAGGWGSVKALGSILQQEHVIASGTRILMHQNKPEGFACVSCS
Sbjct: 18  MKTKDIPEDATFDEYNNAAGGWGSVKALGSILQQEHVIASGTRILMHQNKPEGFACVSCS 77

Query: 61  WAKPADPHLFEFCENGAKATAWEITRKRATPAFFAQHTVTEMEAWNDLELESSGRVTEPM 120
           WAKPADPHLFEFCENGAKATAWEITRKRAT AFFAQHTVTEMEAWNDLELESSGRVTEPM
Sbjct: 78  WAKPADPHLFEFCENGAKATAWEITRKRATAAFFAQHTVTEMEAWNDLELESSGRVTEPM 137

Query: 121 KYDAASDRYLPVSWSEAFDDIAARARA 147
           KYDAASDRYLPVSWSEAFDDIAA+ RA
Sbjct: 138 KYDAASDRYLPVSWSEAFDDIAAQLRA 164


>gi|300311015|ref|YP_003775107.1| anaerobic
           (selenocysteine-containing) formate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 775

 Score =  147 bits (371), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 66/127 (51%), Positives = 85/127 (66%), Gaps = 1/127 (0%)

Query: 13  DEYNNAAGGWGSVKALGSILQQEHVIAS-GTRILMHQNKPEGFACVSCSWAKPADPHLFE 71
           ++YN  AGGWG++K +   L +EHV    G R L+ QN+P+GF C  C+W        FE
Sbjct: 8   EQYNQPAGGWGALKYVALNLVKEHVADGRGLRTLLSQNQPDGFDCPGCAWPDREHTSTFE 67

Query: 72  FCENGAKATAWEITRKRATPAFFAQHTVTEMEAWNDLELESSGRVTEPMKYDAASDRYLP 131
           FCENG KA A E T+KR TP FFAQHTVTE+   +D ELE  GR+T PM YDAA+D+Y  
Sbjct: 68  FCENGVKAVAAEATKKRVTPEFFAQHTVTELMQQSDFELEEHGRLTHPMVYDAATDKYKK 127

Query: 132 VSWSEAF 138
           + W++AF
Sbjct: 128 IEWADAF 134


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.132    0.486 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,730,746
Number of extensions: 54872
Number of successful extensions: 257
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 2
Length of query: 774
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 681
Effective length of database: 1,179,515
Effective search space: 803249715
Effective search space used: 803249715
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 134 (56.2 bits)