BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0089.p
         (461 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310773|ref|YP_003774865.1| exoribonuclease BN transmembran...   631   0.0  
gi|300312602|ref|YP_003776694.1| ribonuclease BN transmembrane p...    66   5e-12

>gi|300310773|ref|YP_003774865.1| exoribonuclease BN transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score =  631 bits (1628), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/317 (100%), Positives = 317/317 (100%)

Query: 145 MISGGSRPQQAWQMTMAAINAWIDDFAPSMGAAIAYYTIFSIAPMLVIAIAVAGMLFGHD 204
           MISGGSRPQQAWQMTMAAINAWIDDFAPSMGAAIAYYTIFSIAPMLVIAIAVAGMLFGHD
Sbjct: 1   MISGGSRPQQAWQMTMAAINAWIDDFAPSMGAAIAYYTIFSIAPMLVIAIAVAGMLFGHD 60

Query: 205 AAQGEIVNQIRDIVGTEGAFAIQGLLKSVSQPREGMIAAGISVVTLVIGATAVFSELQSA 264
           AAQGEIVNQIRDIVGTEGAFAIQGLLKSVSQPREGMIAAGISVVTLVIGATAVFSELQSA
Sbjct: 61  AAQGEIVNQIRDIVGTEGAFAIQGLLKSVSQPREGMIAAGISVVTLVIGATAVFSELQSA 120

Query: 265 LDRIWRIPAVKRKSGVWQLARTRLLSFGLILGLGFLLIISLVVSAALAALGRWWGGWFEG 324
           LDRIWRIPAVKRKSGVWQLARTRLLSFGLILGLGFLLIISLVVSAALAALGRWWGGWFEG
Sbjct: 121 LDRIWRIPAVKRKSGVWQLARTRLLSFGLILGLGFLLIISLVVSAALAALGRWWGGWFEG 180

Query: 325 WQLVLQLLNFVLSFVVFSTLFSMIYKFMPRVTLSWRDVWIGAVATTVLFIIGKYLIGLYL 384
           WQLVLQLLNFVLSFVVFSTLFSMIYKFMPRVTLSWRDVWIGAVATTVLFIIGKYLIGLYL
Sbjct: 181 WQLVLQLLNFVLSFVVFSTLFSMIYKFMPRVTLSWRDVWIGAVATTVLFIIGKYLIGLYL 240

Query: 385 GSTGMTSGFGAAGSFALLLLWIYYSAQIFLLGAEFTWIYANNFGSRALRQKLVNTVEDHH 444
           GSTGMTSGFGAAGSFALLLLWIYYSAQIFLLGAEFTWIYANNFGSRALRQKLVNTVEDHH
Sbjct: 241 GSTGMTSGFGAAGSFALLLLWIYYSAQIFLLGAEFTWIYANNFGSRALRQKLVNTVEDHH 300

Query: 445 VSVQQAQQVVRASEGQR 461
           VSVQQAQQVVRASEGQR
Sbjct: 301 VSVQQAQQVVRASEGQR 317


>gi|300312602|ref|YP_003776694.1| ribonuclease BN transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 470

 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 122/265 (46%), Gaps = 33/265 (12%)

Query: 168 DDFAPSMGAAIAYYTIFSIAPMLVIAIAV--AGMLFGHDAAQGEIVNQIRDIVGTEGAFA 225
           +D  P +  ++ + TI S+ PML IA+A+  A  LF    A  E    + +++    A  
Sbjct: 32  EDRLPQVAGSLTFTTILSLVPMLTIALALFTAFPLFSTFRASLE-AYFVENLMPKGVANT 90

Query: 226 IQGLLKSVSQPREGMIAAGISVVTLVIGATAVFSELQSALDRIWRIPAVKRKSGVWQLAR 285
           I G L   +     + A G   V L++ +    S ++S  ++IWR   VK+   + Q   
Sbjct: 91  ILGYLNQFAAKSARISAVG--GVVLILTSVLTMSTIESVFNQIWR---VKKSRPLVQ--- 142

Query: 286 TRLLSFGLILGLGFLLI-ISLVVSAALA-ALG------RWWGGWFEGWQLVLQLLNFVLS 337
            R+L +  I+ LG LLI +S+ V++ L+ A G       W G  F           + L 
Sbjct: 143 -RVLVYWAIITLGPLLIGVSISVTSYLSTATGGAVKSLPWLGASF-----------YTLV 190

Query: 338 FVVFSTL-FSMIYKFMPRVTLSWRDVWIGAVATTVLFIIGKYLIGLY-LGSTGMTSGFGA 395
            ++FSTL ++++Y  +P  T+ WRD   G +   +   I K L  +Y L     T  +G 
Sbjct: 191 SLMFSTLAYTLLYSTVPNQTVDWRDALAGGLLAGIGLEIAKRLFAVYILKFPTYTMVYGT 250

Query: 396 AGSFALLLLWIYYSAQIFLLGAEFT 420
                + L+WIY    I L GA  T
Sbjct: 251 VAVLPIFLVWIYMMWMITLFGALLT 275


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,109,831
Number of extensions: 39718
Number of successful extensions: 231
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 2
Length of query: 461
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 373
Effective length of database: 1,203,190
Effective search space: 448789870
Effective search space used: 448789870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 132 (55.5 bits)