BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0087.p
         (331 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310771|ref|YP_003774863.1| DNA translocase FtsK 1 protein ...   669   0.0  
gi|300311228|ref|YP_003775320.1| DNA translocase FtsK2 transmemb...   501   e-143

>gi|300310771|ref|YP_003774863.1| DNA translocase FtsK 1 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 524

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/331 (100%), Positives = 331/331 (100%)

Query: 1   MILSLLYKATPEEVRLIMIDPKMLELSIYEGIPHLLAPVVTDMREAAHALNWAVDEMERR 60
           MILSLLYKATPEEVRLIMIDPKMLELSIYEGIPHLLAPVVTDMREAAHALNWAVDEMERR
Sbjct: 194 MILSLLYKATPEEVRLIMIDPKMLELSIYEGIPHLLAPVVTDMREAAHALNWAVDEMERR 253

Query: 61  YKKMSKLGVRNLAGYNQKLDEAAARGEKIPNPFSLTPDAPEPLEKLPTIVIVIDELADLM 120
           YKKMSKLGVRNLAGYNQKLDEAAARGEKIPNPFSLTPDAPEPLEKLPTIVIVIDELADLM
Sbjct: 254 YKKMSKLGVRNLAGYNQKLDEAAARGEKIPNPFSLTPDAPEPLEKLPTIVIVIDELADLM 313

Query: 121 MVVGKKVEELIARLAQKARAAGIHLILATQRPSVDVITGLIKANIPTRVAFQVSSKIDSR 180
           MVVGKKVEELIARLAQKARAAGIHLILATQRPSVDVITGLIKANIPTRVAFQVSSKIDSR
Sbjct: 314 MVVGKKVEELIARLAQKARAAGIHLILATQRPSVDVITGLIKANIPTRVAFQVSSKIDSR 373

Query: 181 TVLDQMGAESLLGHGDMLFLPPGSGYPQRVHGAFVSDEEVHRVVEYLKSFGEPRYIEEIL 240
           TVLDQMGAESLLGHGDMLFLPPGSGYPQRVHGAFVSDEEVHRVVEYLKSFGEPRYIEEIL
Sbjct: 374 TVLDQMGAESLLGHGDMLFLPPGSGYPQRVHGAFVSDEEVHRVVEYLKSFGEPRYIEEIL 433

Query: 241 APPISEDTAQADMFANGEGGDPEADPLYDEAVAFVLKTRRASISSVQRQLRIGYNRAARL 300
           APPISEDTAQADMFANGEGGDPEADPLYDEAVAFVLKTRRASISSVQRQLRIGYNRAARL
Sbjct: 434 APPISEDTAQADMFANGEGGDPEADPLYDEAVAFVLKTRRASISSVQRQLRIGYNRAARL 493

Query: 301 VEQMETAGVLSAMSRNGSRDILVPPSGGVEE 331
           VEQMETAGVLSAMSRNGSRDILVPPSGGVEE
Sbjct: 494 VEQMETAGVLSAMSRNGSRDILVPPSGGVEE 524


>gi|300311228|ref|YP_003775320.1| DNA translocase FtsK2
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 780

 Score =  501 bits (1289), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 254/324 (78%), Positives = 281/324 (86%), Gaps = 1/324 (0%)

Query: 2   ILSLLYKATPEEVRLIMIDPKMLELSIYEGIPHLLAPVVTDMREAAHALNWAVDEMERRY 61
           ILSLLYK+TP +VRLI+IDPKMLELSIYEGIPHLLAPVVTDMR+A HALNWAV+EMERRY
Sbjct: 449 ILSLLYKSTPRQVRLILIDPKMLELSIYEGIPHLLAPVVTDMRQAGHALNWAVEEMERRY 508

Query: 62  KKMSKLGVRNLAGYNQKLDEAAARGEKIPNPFSLTPDAPEPLEKLPTIVIVIDELADLMM 121
           KKMSKLGVRNLAGYNQK+ +A  RGEKIPNPFSLTPDAPEPLE+L TIVI+IDELADLMM
Sbjct: 509 KKMSKLGVRNLAGYNQKIADAEKRGEKIPNPFSLTPDAPEPLEQLETIVIIIDELADLMM 568

Query: 122 VVGKKVEELIARLAQKARAAGIHLILATQRPSVDVITGLIKANIPTRVAFQVSSKIDSRT 181
           VVGKKVEELIAR+AQKARAAGIHLILATQRPSVDVITGLIKAN+PTR+AFQVSSKIDSRT
Sbjct: 569 VVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANVPTRIAFQVSSKIDSRT 628

Query: 182 VLDQMGAESLLGHGDMLFLPPGSGYPQRVHGAFVSDEEVHRVVEYLKSFGEPRYIEEILA 241
           +LDQMGAE+LLG GDML+ PPG+G P RVHGAFVSD+EVHRVVE+LKS GEP YIE IL 
Sbjct: 629 ILDQMGAETLLGMGDMLYNPPGTGLPVRVHGAFVSDDEVHRVVEHLKSQGEPNYIEGILE 688

Query: 242 PPISEDTAQADMFANGEGGDPEADP-LYDEAVAFVLKTRRASISSVQRQLRIGYNRAARL 300
             + ED       A   G        +YD+AVA VLK RRASIS VQR LRIGYNRAARL
Sbjct: 689 GGVLEDADGGGSGAAAGGAGGGEGDEMYDQAVAVVLKHRRASISLVQRHLRIGYNRAARL 748

Query: 301 VEQMETAGVLSAMSRNGSRDILVP 324
           +EQME +G++S M  NG+R+ILVP
Sbjct: 749 LEQMEQSGLVSTMQSNGNREILVP 772


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,054,227
Number of extensions: 44763
Number of successful extensions: 168
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 2
Length of query: 331
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 245
Effective length of database: 1,212,660
Effective search space: 297101700
Effective search space used: 297101700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)