BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0086.p
         (451 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310771|ref|YP_003774863.1| DNA translocase FtsK 1 protein ...   347   9e-97
gi|300310770|ref|YP_003774862.1| hypothetical protein Hsero_1438...   271   9e-74
gi|300311228|ref|YP_003775320.1| DNA translocase FtsK2 transmemb...   169   3e-43

>gi|300310771|ref|YP_003774863.1| DNA translocase FtsK 1 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 524

 Score =  347 bits (891), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 169/170 (99%), Positives = 169/170 (99%)

Query: 270 MPEAPTAPEPAPVSMAYPDDVDEPRVEIPLPSLDLLDEVPESRIEVDTEQLQETGRLIEQ 329
           MPEAPTAPEPAPVSMAYPD VDEPRVEIPLPSLDLLDEVPESRIEVDTEQLQETGRLIEQ
Sbjct: 1   MPEAPTAPEPAPVSMAYPDYVDEPRVEIPLPSLDLLDEVPESRIEVDTEQLQETGRLIEQ 60

Query: 330 RLKEFKVPVTVLGAEAGPVITRFEVEPAQGVRGAQVVNLMKDLSRALGLTSIRVVETIPG 389
           RLKEFKVPVTVLGAEAGPVITRFEVEPAQGVRGAQVVNLMKDLSRALGLTSIRVVETIPG
Sbjct: 61  RLKEFKVPVTVLGAEAGPVITRFEVEPAQGVRGAQVVNLMKDLSRALGLTSIRVVETIPG 120

Query: 390 KTCMGLELPNARRQMIKLSEIVHSQAYRKSASHLTIAMGKDITGTPVVTD 439
           KTCMGLELPNARRQMIKLSEIVHSQAYRKSASHLTIAMGKDITGTPVVTD
Sbjct: 121 KTCMGLELPNARRQMIKLSEIVHSQAYRKSASHLTIAMGKDITGTPVVTD 170


>gi|300310770|ref|YP_003774862.1| hypothetical protein Hsero_1438
           [Herbaspirillum seropedicae SmR1]
          Length = 387

 Score =  271 bits (692), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 152/153 (99%), Positives = 152/153 (99%)

Query: 1   VPLSALTGNGSQRGKWPALKPGAQPAKPRPESEWAAFETLRPTEAMLARAAASRAIQAAS 60
           VPLSALTGNGSQRGKWPALKPGAQPAKPRPESEWAAFETLRPTEAMLARAAASRAIQAAS
Sbjct: 202 VPLSALTGNGSQRGKWPALKPGAQPAKPRPESEWAAFETLRPTEAMLARAAASRAIQAAS 261

Query: 61  AAADVSLARAAPPAAAAPRPIPPSIARPAQPGGAPAASAAPAPATRGMRISSVGRPAPAS 120
           AAADVSLARAAPPAAAAPRPIPPSIARPAQPGGAPAASAAPAPATRGMRISSVGRPAPAS
Sbjct: 262 AAADVSLARAAPPAAAAPRPIPPSIARPAQPGGAPAASAAPAPATRGMRISSVGRPAPAS 321

Query: 121 AASPGAASPAERADVIPTRLMRSLQESSAPAAA 153
           AASPGAASPAERADVIPTRLMRSLQESSAPAA 
Sbjct: 322 AASPGAASPAERADVIPTRLMRSLQESSAPAAG 354


>gi|300311228|ref|YP_003775320.1| DNA translocase FtsK2
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 780

 Score =  169 bits (429), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 116/173 (67%), Gaps = 7/173 (4%)

Query: 274 PTAPEPAPVSMAYPDDVDEPR-------VEIPLPSLDLLDEVPESRIEVDTEQLQETGRL 326
           P   EP  V +   D V + +       V   LP L LLDE P S+  V  E L+ T RL
Sbjct: 252 PIRIEPQIVEVQKSDRVQKEKQTSLFDDVSTDLPPLSLLDEAPPSQQTVSVETLEFTSRL 311

Query: 327 IEQRLKEFKVPVTVLGAEAGPVITRFEVEPAQGVRGAQVVNLMKDLSRALGLTSIRVVET 386
           IE++L +F V V V+ A  GPVITR+E+EPA GV+G+Q+VNL +DL+R+L LTSIRVVE 
Sbjct: 312 IEKKLSDFGVEVKVVAAYPGPVITRYEIEPATGVKGSQIVNLARDLARSLSLTSIRVVEV 371

Query: 387 IPGKTCMGLELPNARRQMIKLSEIVHSQAYRKSASHLTIAMGKDITGTPVVTD 439
           I GK  MGLELPN +RQ+++L+EI+ S+ Y  S S LT+A+GKDI G PVV D
Sbjct: 372 IQGKNYMGLELPNPKRQIVRLTEILGSKVYNDSHSSLTVALGKDIAGNPVVAD 424


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.311    0.127    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 953,681
Number of extensions: 32611
Number of successful extensions: 139
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 5
Length of query: 451
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 363
Effective length of database: 1,203,190
Effective search space: 436757970
Effective search space used: 436757970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 132 (55.5 bits)