BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0068.p (1470 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310753|ref|YP_003774845.1| transmembrane protein [Herbaspi... 2819 0.0 >gi|300310753|ref|YP_003774845.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1439 Score = 2819 bits (7307), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1393/1398 (99%), Positives = 1395/1398 (99%) Query: 1 MSEEHDNAAHKPGRWALCWRVARGSYFRLNRASHHLLGFTVKLLLAGYFIFCALFLVLRY 60 MSEEHDNAAHKPGRWALCWRVARGSYFRLNRASHHLLGFTVKLLLAGYFIFCALFLVLRY Sbjct: 1 MSEEHDNAAHKPGRWALCWRVARGSYFRLNRASHHLLGFTVKLLLAGYFIFCALFLVLRY 60 Query: 61 AVLPEIGHYKPQIERLVSAQIGRAVSIDVINASWRGLRPQLSLTNITVHDQQGEPALTLP 120 AVLPEIGHYKPQIERLVSAQIGRAVSIDVINASWRGLRPQLSLTNITVHDQQGEPALTLP Sbjct: 61 AVLPEIGHYKPQIERLVSAQIGRAVSIDVINASWRGLRPQLSLTNITVHDQQGEPALTLP 120 Query: 121 QVSTTLSWSSVVVASLRLENLSIEGADLAIRRDAGGKLFVAGIPVPTGGDGSSLDWLLSQ 180 QVSTTLSWSSVVVASLRLENLSIEGADLAIRRDAGGKLFVAGIPVPTGGDGSSLDWLLSQ Sbjct: 121 QVSTTLSWSSVVVASLRLENLSIEGADLAIRRDAGGKLFVAGIPVPTGGDGSSLDWLLSQ 180 Query: 181 REIVIRHSKLRWDDELRQAPELVLEDVNLVLHNRWLRHRLSLRAIPPASYAAPLDVRADF 240 REIVIRHSKLRWDDELRQAPELVLEDVNLVLHNRWLRHRLSLRAIPP SYAAPLDVRADF Sbjct: 181 REIVIRHSKLRWDDELRQAPELVLEDVNLVLHNRWLRHRLSLRAIPPTSYAAPLDVRADF 240 Query: 241 SHPAFARSSDILRWKGTLYADLQRTDLSVWRAYFDYPIAIQSGTGSVRAWLALDHAKVAN 300 SHPAFARSSDILRWKGTLYADLQRTDLSVWRAYFDYPIAIQSGTGSVRAWLALDHAKVAN Sbjct: 241 SHPAFARSSDILRWKGTLYADLQRTDLSVWRAYFDYPIAIQSGTGSVRAWLALDHAKVAN 300 Query: 301 FTADLALNNFNAQLSRQLEPLSLKRVNGRISASESLGATPEDGIPTFGANGHQVTLTDFS 360 FTADLALNNFNAQLSRQLEPLSLKRVNGRISASESLGATPEDGIPTFGANGHQVTLTDFS Sbjct: 301 FTADLALNNFNAQLSRQLEPLSLKRVNGRISASESLGATPEDGIPTFGANGHQVTLTDFS 360 Query: 361 IETPDGFVLPPTSIAESYEPGTPLKAERTSVKATYLNLQTLSQLATRLPLAPSQRKLLDD 420 IETPDGFVLPPTSIAESYEPGTPLKAERTSVKATYLNLQTLSQLATRLPLAPSQRKLLDD Sbjct: 361 IETPDGFVLPPTSIAESYEPGTPLKAERTSVKATYLNLQTLSQLATRLPLAPSQRKLLDD 420 Query: 421 LAPRGELRDFTVQWQGTYPELASYRVQGRFSGLGLKGLPAHVEPRRNAAQQVRAQWAGFP 480 LAPRGELRDFTVQWQGTYPELASYRVQGRFSGLGLKGLPAHVEPRRNAAQQVRAQWAGFP Sbjct: 421 LAPRGELRDFTVQWQGTYPELASYRVQGRFSGLGLKGLPAHVEPRRNAAQQVRAQWAGFP 480 Query: 481 GFSNIDGEIDATEKGGSVKLDSQDLAIEMPAEQFVESSMPFDSLKMQARWQYLKDQTLQV 540 GFSNIDGEIDATEKGGSVKLDSQ+LAIEMPAEQFVESSMPFDSLKMQARWQYLKDQTLQV Sbjct: 481 GFSNIDGEIDATEKGGSVKLDSQELAIEMPAEQFVESSMPFDSLKMQARWQYLKDQTLQV 540 Query: 541 DLEQLQFAQPGVAGSLSGRHVQPLQGKSAGSVDLHGELSRFDVKAIRRYLPRHLSEPLRH 600 DLEQLQFAQPGVAGSLSGRHVQPLQGKSAGSVDLHGELSRFDVKAIRRYLPRHLSEPLRH Sbjct: 541 DLEQLQFAQPGVAGSLSGRHVQPLQGKSAGSVDLHGELSRFDVKAIRRYLPRHLSEPLRH 600 Query: 601 WLTDGLVDGSLRDVQFTLKGALADFPFHTAKPGDKPKGQFQLSGDFEGLKLNYTPGHLGR 660 WLTDGLVDGSLRDVQFTLKGALADFPFHTAKPGDKPKGQFQLSGDFEGLKLNYTPGHLGR Sbjct: 601 WLTDGLVDGSLRDVQFTLKGALADFPFHTAKPGDKPKGQFQLSGDFEGLKLNYTPGHLGR 660 Query: 661 DGKEPEWPLLEEGRGHLSIDRTRLEIKADSARTLGAKLGPVTARVADVDSHEAELEIEGV 720 DGKEPEWPLLEEGRGHLSIDRTRLEIKADSARTLGAKLGPVTARVADVDSHEAELEIEGV Sbjct: 661 DGKEPEWPLLEEGRGHLSIDRTRLEIKADSARTLGAKLGPVTARVADVDSHEAELEIEGV 720 Query: 721 ASAPMAVFLRYVNQSPVARWTGNLMEHSSATGEARLDLKFQMPLHHAIDTRAQGAFHFAN 780 ASAPMAVFLRYVNQSPVARWTGNLMEHSSATGEARLDLKFQMPLHHAIDTRAQGAFHFAN Sbjct: 721 ASAPMAVFLRYVNQSPVARWTGNLMEHSSATGEARLDLKFQMPLHHAIDTRAQGAFHFAN 780 Query: 781 NDVDLLPDLPVLYRTNGKVEFNEHGFTLNGVRGQFLGDALTISGGTQKDGSSQMRLEGAI 840 NDVDLLPDLPVLYRTNGKVEFNEHGFTLNGVRGQFLGDALTISGGTQKDGSSQMRLEGAI Sbjct: 781 NDVDLLPDLPVLYRTNGKVEFNEHGFTLNGVRGQFLGDALTISGGTQKDGSSQMRLEGAI 840 Query: 841 NVDMLRKQYPEPSLQRLLARLSGTTRYNATVLVRQHQPEVVVESSLAGLGVDLPVPLRKS 900 NVDMLRKQYPEPSLQRLLARLSGTTRYNATVLVRQHQPEVVVESSLAGLGVDLPVPLRKS Sbjct: 841 NVDMLRKQYPEPSLQRLLARLSGTTRYNATVLVRQHQPEVVVESSLAGLGVDLPVPLRKS 900 Query: 901 AQESLPLRFELLPLASADPLIEREELKLALGSNIASRYVRERVAATGAAWRVTSGGIGWN 960 AQESLPLRFELLPLASADPLIEREELKLALGS+IASRYVRERVAATGAAWRVTSGGIGWN Sbjct: 901 AQESLPLRFELLPLASADPLIEREELKLALGSSIASRYVRERVAATGAAWRVTSGGIGWN 960 Query: 961 QPAPSPSAGLKLALATDSLEVDPWLSLKNELVGPAVAEDASAASTRLGSGDIAQYLEPDQ 1020 QPAPSPSAGLKLALA DSLEVDPWLSLKNELVGPAVAEDASAASTRLGSGDIAQYL PDQ Sbjct: 961 QPAPSPSAGLKLALAADSLEVDPWLSLKNELVGPAVAEDASAASTRLGSGDIAQYLAPDQ 1020 Query: 1021 VSARVGELSLKGKKLNKLILEAAHRRNSWQISLESQQVAGTVTWDESGAARGPGKVTARL 1080 VSARVGELSLKGKKLNKLILEAAHRRNSWQISLESQQVAGTVTWDESGAARGPGKVTARL Sbjct: 1021 VSARVGELSLKGKKLNKLILEAAHRRNSWQISLESQQVAGTVTWDESGAARGPGKVTARL 1080 Query: 1081 SSLVIPKSTPTAENGAATVASEDDKVQMPALDIRAEQFELGGKKLGRLELDASNMVTSVG 1140 SSLVIPKSTPTAENGAATVASEDDKVQMPALDIRAEQFELGGKKLGRLELDASNMVTSVG Sbjct: 1081 SSLVIPKSTPTAENGAATVASEDDKVQMPALDIRAEQFELGGKKLGRLELDASNMVTSVG 1140 Query: 1141 REWRISRLLLANPDAQFRAAGNWMSFGSNHTSNFTYALDIEDAGKLLERFGYPGTVRGGK 1200 REWRISRLLLANPDAQFRAAGNWMSFGSNHTSNFTYALDIEDAGKLLERFGYPGTVRGGK Sbjct: 1141 REWRISRLLLANPDAQFRAAGNWMSFGSNHTSNFTYALDIEDAGKLLERFGYPGTVRGGK 1200 Query: 1201 GKLDGDLSWKAPPYAMDMASLAGQVHMDVHAGQFLKVDPGAAKLLGVLNLQALPRRLTLD 1260 GKLDGDLSWKAPPYAMDMASLAGQVHMDVHAGQFLKVDPGAAKLLGVLNLQALPRRLTLD Sbjct: 1201 GKLDGDLSWKAPPYAMDMASLAGQVHMDVHAGQFLKVDPGAAKLLGVLNLQALPRRLTLD 1260 Query: 1261 FRDVFSEGFAFDTVAGTASINKGIASTDNLKMTGVTASVLMSGSADIARETQDLHVVVIP 1320 FRDVFSEGFAFDTVAGTASINKGIASTDNLKMTGVTASVLMSGSADIARETQDLHVVVIP Sbjct: 1261 FRDVFSEGFAFDTVAGTASINKGIASTDNLKMTGVTASVLMSGSADIARETQDLHVVVIP 1320 Query: 1321 EINLGTASVVAMAVNPVVGVSTLLAQLFLRNPVMKSLSFEYKVSGSWSDPIVVKQGQVTP 1380 EINLGTASVVAMAVNPVVGVSTLLAQLFLRNPVMKSLSFEYKVSGSWSDPIVVKQGQVTP Sbjct: 1321 EINLGTASVVAMAVNPVVGVSTLLAQLFLRNPVMKSLSFEYKVSGSWSDPIVVKQGQVTP 1380 Query: 1381 VDGQRARELLEQGRGQGL 1398 VDGQRARELLEQGRGQGL Sbjct: 1381 VDGQRARELLEQGRGQGL 1398 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.134 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 4,665,914 Number of extensions: 203054 Number of successful extensions: 533 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 531 Number of HSP's successfully gapped: 1 Length of query: 1470 Length of database: 1,619,870 Length adjustment: 98 Effective length of query: 1372 Effective length of database: 1,155,840 Effective search space: 1585812480 Effective search space used: 1585812480 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 137 (57.4 bits)