BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0067.p
         (909 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310752|ref|YP_003774844.1| glutamate-ammonia-ligase adenyl...  1836   0.0  

>gi|300310752|ref|YP_003774844.1| glutamate-ammonia-ligase
           adenylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 927

 Score = 1836 bits (4755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 907/909 (99%), Positives = 907/909 (99%)

Query: 1   MPVFSPAHHRSLVEASSSRYYTRWTQADPARPALVAAAAAAGALDRAFLQQRLEHDLASG 60
           MPVFSPAHHRSLVEASSSRYYTRWTQADPARPALVAAAAAAGALDRAFLQQRLEHDLASG
Sbjct: 19  MPVFSPAHHRSLVEASSSRYYTRWTQADPARPALVAAAAAAGALDRAFLQQRLEHDLASG 78

Query: 61  LSLPAAMRRLRNLVICTLITRDLDGRGDLDEVVTTMTGFADFAVQTHLAALMHEQTALYG 120
           LSLPAAMRRLRNLVICTLITRDLDGRGDLDEVVTTMTGFADFAVQTHLAALM EQTALYG
Sbjct: 79  LSLPAAMRRLRNLVICTLITRDLDGRGDLDEVVTTMTGFADFAVQTHLAALMQEQTALYG 138

Query: 121 LPIGEESGRPQEMIVLGMGKLGGGELNVSSDIDLIFVYPEDGDTRAEAGQKSLSNHEFFV 180
           LPIGEESGRPQEMIVLGMGKLGGGELNVSSDIDLIFVYPEDGDTRAEAGQKSLSNHEFFV
Sbjct: 139 LPIGEESGRPQEMIVLGMGKLGGGELNVSSDIDLIFVYPEDGDTRAEAGQKSLSNHEFFV 198

Query: 181 RLGKKLIGALAEITEDGFTFRVDMALRPNGNSGPLVASFNMVEEYLVRQGREWERYAWTK 240
           RLGKKLIGALAEITEDGFTFRVDMALRPNGNSGPLVASFNMVEEYLVRQGREWERYAWTK
Sbjct: 199 RLGKKLIGALAEITEDGFTFRVDMALRPNGNSGPLVASFNMVEEYLVRQGREWERYAWTK 258

Query: 241 ARALTGTPEDIATLEAISRPFIFRRYLDYGSIDALRSMHGQIRAEVKRQEALHPDRSNNV 300
           ARALTGTPEDIATLEAISRPFIFRRYLDYGSIDALRSMHGQIRAEVKRQEALHPDRSNNV
Sbjct: 259 ARALTGTPEDIATLEAISRPFIFRRYLDYGSIDALRSMHGQIRAEVKRQEALHPDRSNNV 318

Query: 301 KLGRGGIREIEFTSQVFQLIRGGRDAELRDRSTRTTLRTLAAKDLLAPEVVEQLLHAYTF 360
           KLGRGGIREIEFTSQVFQLIRGGRDAELRDRSTRTTLRTLAAKDLLAPEVVEQLLHAYTF
Sbjct: 319 KLGRGGIREIEFTSQVFQLIRGGRDAELRDRSTRTTLRTLAAKDLLAPEVVEQLLHAYTF 378

Query: 361 LRNLEHRLQYLEDAQTHTLPVNPDDLLLVARMMGYEEPAALLHELERQRAIVAAQFDAIF 420
           LRNLEHRLQYLEDAQTHTLPVNPDDLLLVARMMGYEEPAALLHELERQRAIVAAQFDAIF
Sbjct: 379 LRNLEHRLQYLEDAQTHTLPVNPDDLLLVARMMGYEEPAALLHELERQRAIVAAQFDAIF 438

Query: 421 ADKQSEADNDGPSVSVSDNDNLEGLADALRLVGFPEADIADGARRLHLTWQSPRMQSLPE 480
           ADKQSEADNDGPSVSVSDNDNLEGLADALRLVGFPEADIADGARRLHLTWQSPRMQSLPE
Sbjct: 439 ADKQSEADNDGPSVSVSDNDNLEGLADALRLVGFPEADIADGARRLHLTWQSPRMQSLPE 498

Query: 481 ASRNRLNTVINTSLPLLAALHYDQLPALGRLLDLLEAIARRAAYLALLTEYPYALQRLVR 540
           ASRNRLNTVINTSLPLLAALHYDQLPALGRLLDLLEAIARRAAYLALLTEYPYALQRLVR
Sbjct: 499 ASRNRLNTVINTSLPLLAALHYDQLPALGRLLDLLEAIARRAAYLALLTEYPYALQRLVR 558

Query: 541 MIGASGWAATYLTRHPLLLDELLDDRNLKAASDWTAFAENCRRQLATAEGDTERQLDILR 600
           MIGASGWAATYLTRHPLLLDELLDDRNLKAASDW AFAENCRRQLATAEGDTERQLDILR
Sbjct: 559 MIGASGWAATYLTRHPLLLDELLDDRNLKAASDWAAFAENCRRQLATAEGDTERQLDILR 618

Query: 601 ELHHAEQFRLLAQDLEGDLSVEKLADELSALADVLVQVTIEAVWQTVAQRHREVPQFAVI 660
           ELHHAEQFRLLAQDLEGDLSVEKLADELSALADVLVQVTIEAVWQTVAQRHREVPQFAVI
Sbjct: 619 ELHHAEQFRLLAQDLEGDLSVEKLADELSALADVLVQVTIEAVWQTVAQRHREVPQFAVI 678

Query: 661 AYGKLGGKELGYASDLDVVFLYDDEDQDAPGLYAKLAQRFITWMTSHTPAGTLFDIDIAL 720
           AYGKLGGKELGYASDLDVVFLYDDEDQDAPGLYAKLAQRFITWMTSHTPAGTLFDIDIAL
Sbjct: 679 AYGKLGGKELGYASDLDVVFLYDDEDQDAPGLYAKLAQRFITWMTSHTPAGTLFDIDIAL 738

Query: 721 RPDGASGLLVSPLSSFEKYQLNAAWIWEHQALTRARFCAGDTAIGERFEALRERVLRQPR 780
           RPDGASGLLVSPLSSFEKYQLNAAWIWEHQALTRARFCAGDTAIGERFEALRERVLRQPR
Sbjct: 739 RPDGASGLLVSPLSSFEKYQLNAAWIWEHQALTRARFCAGDTAIGERFEALRERVLRQPR 798

Query: 781 DPARLEEEVLSMRRRMREAHPNRSTMFDLKHDEGGMIDIEFMVQYLVLRHASDHPQLTGD 840
           DPARLEEEVLSMRRRMREAHPNRSTMFDLKHDEGGMIDIEFMVQYLVLRHASDHPQLTGD
Sbjct: 799 DPARLEEEVLSMRRRMREAHPNRSTMFDLKHDEGGMIDIEFMVQYLVLRHASDHPQLTGD 858

Query: 841 IGNIALLKLAGQLGLIDALLADEAANAYRLFRKLQHQIRLQGSERAHIDAIRVEHERACV 900
           IGNIALLKLAGQLGLIDALLADEAANAYRLFRKLQHQIRLQGSERAHIDAIRVEHERACV
Sbjct: 859 IGNIALLKLAGQLGLIDALLADEAANAYRLFRKLQHQIRLQGSERAHIDAIRVEHERACV 918

Query: 901 IRLWQQVFG 909
           IRLWQQVFG
Sbjct: 919 IRLWQQVFG 927


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,780,098
Number of extensions: 117122
Number of successful extensions: 362
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 1
Length of query: 909
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 815
Effective length of database: 1,174,780
Effective search space: 957445700
Effective search space used: 957445700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 135 (56.6 bits)