BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0058.p
         (387 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313550|ref|YP_003777642.1| ABC transporter permease [Herba...   134   1e-32

>gi|300313550|ref|YP_003777642.1| ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 364

 Score =  134 bits (336), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 155/308 (50%), Gaps = 9/308 (2%)

Query: 73  FGTMFAWQNTLQRAAPLLLTALCVALPARVGLIVIGGEGALALGGLAAAVMPQLLP---- 128
           F    A    L ++ PL+L AL +A+  R  +  IG EG   +G L +  M   L     
Sbjct: 60  FNGKRAISELLLKSVPLILCALGLAVCFRASIWNIGAEGQFTVGALCSGAMLVWLDVPGH 119

Query: 129 GLPSLVMLVVMALAAMLAGGLWIALCGGLRQWRGVNETIASLLLSYLAVAVFKHLVEGPL 188
           G+   + LV+M +A ++ G LW A+   LR     NE + SL+L+Y+A  +    V GPL
Sbjct: 120 GVSGGMGLVLMIVAGVIGGALWAAITAFLRDQFNANEILVSLMLTYVAQLLLMWAVNGPL 179

Query: 189 RDPASLNKPSTLPLPDPYLIGSL-PGLEVHWGLAWGALACLAAWVFLRHSVPGFAMGVVG 247
           +DP  +N P +      +++ +L  G  +H G A   +A +   +F+  S+ GF++ V G
Sbjct: 180 KDPNGMNFPQSKVFSSEFMLPTLISGTRLHIGFAVAIVAAVLMAIFMMRSLRGFSLMVGG 239

Query: 248 GNVRTARLVGLPVNRLILTACALGGAAAGLAGMFEVSAVQGSATSALLAGYGFSGILVAF 307
                AR  G      +  +  + GA AGLAG FE++   G    ++  GYGF+ I+VAF
Sbjct: 240 VAPHAARYAGFSARSALWVSLLISGAFAGLAGAFEIAGPIGQLLPSVSPGYGFAAIIVAF 299

Query: 308 AARQNPLAIIVCALVIGGVEASGSLLQRRLDLPDATTLVLQGLLFCNLLAWEAITGRLAA 367
             R +P+  I+  L++  +   G L Q RL LP A T V QG+L   LLA +     L  
Sbjct: 300 IGRLHPIGAILGGLIMSLLYLGGELAQSRLGLPSAITGVFQGMLLFLLLACDT----LID 355

Query: 368 LKLRWQQQ 375
            +L W ++
Sbjct: 356 YRLAWNKK 363


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.139    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 998,107
Number of extensions: 31721
Number of successful extensions: 244
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 5
Length of query: 387
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 300
Effective length of database: 1,207,925
Effective search space: 362377500
Effective search space used: 362377500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)