BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0056.p
         (231 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310742|ref|YP_003774834.1| cysteine hydrolase falmily prot...   466   e-133
gi|300310740|ref|YP_003774832.1| isochorismatase family protein ...   211   4e-56
gi|300310658|ref|YP_003774750.1| 2,3-dihydro-2,3-dihydroxybenzoa...    62   6e-11

>gi|300310742|ref|YP_003774834.1| cysteine hydrolase falmily protein
           [Herbaspirillum seropedicae SmR1]
          Length = 231

 Score =  466 bits (1200), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 227/231 (98%), Positives = 229/231 (99%)

Query: 1   MSARFIQAEPYPWPYDGALTPANTALIVIDMQTDFSGIGGYVDKMGYDLSLTRAPIEPIK 60
           MSARFIQAEPYPWPYDGALTPANTALIVIDMQTDF GIGGYVDKMGYDLSLTRAPIEPI+
Sbjct: 1   MSARFIQAEPYPWPYDGALTPANTALIVIDMQTDFCGIGGYVDKMGYDLSLTRAPIEPIR 60

Query: 61  NVLAAMRAGGYTIIHTREGHRPDLSDLPANKRWRSRQIGANGVGIGDAGPCGRILVRGEP 120
            VLAAMRAGGYTIIHTREGHRPDLSDLPANKRWRSRQIGANGVGIGDAGPCGRILVRGEP
Sbjct: 61  KVLAAMRAGGYTIIHTREGHRPDLSDLPANKRWRSRQIGANGVGIGDAGPCGRILVRGEP 120

Query: 121 GWEIIPELAPIAGEIIIDKPGKGSFCATDLEMILHTRGIRNIVLTGITTDVCVHTTMREA 180
           GWEIIPELAPIAGEIIIDKPGKGSFCATDLEMILHTRGIRNIVLTGITTDVCVHTTMREA
Sbjct: 121 GWEIIPELAPIAGEIIIDKPGKGSFCATDLEMILHTRGIRNIVLTGITTDVCVHTTMREA 180

Query: 181 NDRGFECVMLSDCCGATDYNNHLAALSMIKMQGGVFGAVSDSAALIAVIGA 231
           NDRGFECVMLSDCCGATDYNNHLAALSMIKMQGGVFGAV+DSAALIAVIGA
Sbjct: 181 NDRGFECVMLSDCCGATDYNNHLAALSMIKMQGGVFGAVADSAALIAVIGA 231


>gi|300310740|ref|YP_003774832.1| isochorismatase family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 227

 Score =  211 bits (537), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 108/227 (47%), Positives = 146/227 (64%), Gaps = 6/227 (2%)

Query: 5   FIQAEPYPWPYDGALTPANTALIVIDMQTDFSGIGGYVDKMGYDLSLTRAPIEPIKNVLA 64
            I+ + +P+PY     P +TAL+VIDMQ DF   GG+   +G D+    A +  +  +LA
Sbjct: 1   MIRIDAFPYPYQ--FHPRSTALVVIDMQRDFVEEGGFGSALGNDVRPLGAIVPTVAALLA 58

Query: 65  AMRAGGYTIIHTREGHRPDLSDLPANKRWRSRQIGANGVGIGDAGPCGRILVRGEPGWEI 124
             R     ++HTRE H PDLSD P  KR R    G   +GIGD GP GRILVRGEPG +I
Sbjct: 59  LARQTQMLVVHTRESHLPDLSDCPRTKRLR----GNPTLGIGDVGPMGRILVRGEPGNQI 114

Query: 125 IPELAPIAGEIIIDKPGKGSFCATDLEMILHTRGIRNIVLTGITTDVCVHTTMREANDRG 184
           +P+L P+AGEI+IDKPGKG+F ATDL   L  RGI ++++ G+TT+VCV T+MREANDRG
Sbjct: 115 LPQLTPMAGEIVIDKPGKGAFYATDLHAQLQERGITHLLVAGVTTEVCVQTSMREANDRG 174

Query: 185 FECVMLSDCCGATDYNNHLAALSMIKMQGGVFGAVSDSAALIAVIGA 231
           +EC+++ D C +     H A L M+  QGG+ G  +  A L + + A
Sbjct: 175 YECLVVEDACASYFPAFHRATLDMLTAQGGIVGWRAPLAQLQSAVTA 221


>gi|300310658|ref|YP_003774750.1| 2,3-dihydro-2,3-dihydroxybenzoate
           synthetase [Herbaspirillum seropedicae SmR1]
          Length = 207

 Score = 61.6 bits (148), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 15/151 (9%)

Query: 56  IEPIKNVLAAMRAGGYTIIHTREGHRPDLSDLPANKRWRSRQIGANGVGIGDAGPCGRIL 115
           IE  +++LA  R  G+ + H+R     D +D         R I       G   P    L
Sbjct: 49  IERTRSLLAHARQQGWPVAHSRIVFADDDAD---------RNI------FGMKVPGMVTL 93

Query: 116 VRGEPGWEIIPELAPIAGEIIIDKPGKGSFCATDLEMILHTRGIRNIVLTGITTDVCVHT 175
               PG  I+P+LAP  GE+++ K    +F  T L   L   G++ +++ G  T  CV  
Sbjct: 94  KEDLPGSAIVPQLAPANGELVVRKTVPSAFFGTSLAPWLTQHGVQTLLVAGAVTSGCVRA 153

Query: 176 TMREANDRGFECVMLSDCCGATDYNNHLAAL 206
           ++ +A   GF  +++SDC G      H A L
Sbjct: 154 SVVDAMSWGFRPLVVSDCVGDRALGPHEANL 184


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.140    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 790,172
Number of extensions: 34915
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 4
Length of query: 231
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,231,600
Effective search space: 183508400
Effective search space used: 183508400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)