BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0055.p (522 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310741|ref|YP_003774833.1| ABC transporter ATPase [Herbasp... 1032 0.0 gi|300313549|ref|YP_003777641.1| ABC transporter ATPase [Herbasp... 271 7e-74 gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [H... 244 1e-65 gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [H... 233 4e-62 gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [H... 225 8e-60 >gi|300310741|ref|YP_003774833.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 522 Score = 1032 bits (2669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 517/522 (99%), Positives = 517/522 (99%) Query: 1 MHALELEIINAGKSFGSFRALDEVSLKIRAGTIHALLGENGAGKSTLVKGLVGYSPLDQG 60 MHALELEIINAGKSFGSFRALDEVSLKIRAGTIHALLGENGAGKSTLVKGLVGYSPLDQG Sbjct: 1 MHALELEIINAGKSFGSFRALDEVSLKIRAGTIHALLGENGAGKSTLVKGLVGYSPLDQG 60 Query: 61 SILADRREVDIRSARVPNQLGIGMVYQHFTLAPSLTVAENLLLARGDLPWRIRWGSERAV 120 SILADRREVDIRSARVPNQLGIGMVYQHFTLAPSLTVAENLLLARGDLPWRIRW SERAV Sbjct: 61 SILADRREVDIRSARVPNQLGIGMVYQHFTLAPSLTVAENLLLARGDLPWRIRWSSERAV 120 Query: 121 LEEFMAKMPFKLSPERTVSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQEADEVL 180 LEEFMAKMPFKLSPERTVSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQEADEVL Sbjct: 121 LEEFMAKMPFKLSPERTVSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQEADEVL 180 Query: 181 GLMHALTRQQELTVLMITHKFHEVSAYADDVTVLRKGRLVGSARVAETSPDTLAHWMMGQ 240 GLMHALTRQQELTVLMITHKFHEVSAYADDVTVLRKGRLVGSARVAETSPD LAHWMMGQ Sbjct: 181 GLMHALTRQQELTVLMITHKFHEVSAYADDVTVLRKGRLVGSARVAETSPDMLAHWMMGQ 240 Query: 241 ARAEKAQVARPAVPVQAPVGLEVRDLTVNNDRGVAAVRALSLQVRRGEIVGLAGISGNGQ 300 ARAEKAQVARPAVPVQA VGLEVRDLTVNNDRGVAAVRALSLQVRRGEIVGLAGISGNGQ Sbjct: 241 ARAEKAQVARPAVPVQASVGLEVRDLTVNNDRGVAAVRALSLQVRRGEIVGLAGISGNGQ 300 Query: 301 KELVEALLGQRRSLLGEIRVEGAPYAATREEMRRLRVFALPEEPLRNACIAGMSVAENMA 360 KELVEALLGQRR LLGEIRVEGAPYAATREEMRRLRVFALPEEPLRNACIAGMSVAENMA Sbjct: 301 KELVEALLGQRRLLLGEIRVEGAPYAATREEMRRLRVFALPEEPLRNACIAGMSVAENMA 360 Query: 361 LRNFDVAPFKRGGWRIDRSAMKRQAQALISAFNVKPPVPERPIGTLSGGNVQRAVLAREL 420 LRNFDVAPFKRGGWRIDRSAMKRQAQALISAFNVKPPVPERPIGTLSGGNVQRAVLAREL Sbjct: 361 LRNFDVAPFKRGGWRIDRSAMKRQAQALISAFNVKPPVPERPIGTLSGGNVQRAVLAREL 420 Query: 421 GEDGQDGAANVLIVANPVFGLDFASVADIHARLLQARARGAAVLLVSEDLDELLELSDRI 480 GEDGQDGAANVLIVANPVFGLDFASVADIHARLLQARARGAAVLLVSEDLDELLELSDRI Sbjct: 421 GEDGQDGAANVLIVANPVFGLDFASVADIHARLLQARARGAAVLLVSEDLDELLELSDRI 480 Query: 481 LVMTEGRIVHVAQDVAKEGADRAALGRWMAGHAQQSTHTEAA 522 LVMTEGRIVHVAQDVAKEGADRAALGRWMAGHAQQSTH EAA Sbjct: 481 LVMTEGRIVHVAQDVAKEGADRAALGRWMAGHAQQSTHAEAA 522 >gi|300313549|ref|YP_003777641.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 518 Score = 271 bits (694), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 186/511 (36%), Positives = 280/511 (54%), Gaps = 18/511 (3%) Query: 4 LELEIINAGKSFGSFRALDEVSLKIRAGTIHALLGENGAGKSTLVKGLVGYSPLDQGSIL 63 L LEI + K++ A D+VSL + G IHA+LGENGAGKSTL+K + G D G I Sbjct: 6 LRLEISHVRKAYPGVLANDDVSLAVAPGEIHAVLGENGAGKSTLMKIIFGAVKPDAGEIR 65 Query: 64 ADRREVDIRSARVPNQLGIGMVYQHFTLAPSLTVAENLLLARGDLPWRIRWGSERAVLEE 123 + V I + +V +LGI MV+QHF+L +LTV EN+ L D ++ +ER + Sbjct: 66 WNGEAVQIANPQVARKLGIAMVFQHFSLFDTLTVTENIALGL-DAKTDLKELAER--ITR 122 Query: 124 FMAKMPFKLSPERTVSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQEADEVLGLM 183 K +L P+R V +LS GE+Q++EI++ L + LILDEPTSVLTPQ +++ + Sbjct: 123 TGEKYGLELEPQRHVHTLSVGERQRVEIVRALLTEPQLLILDEPTSVLTPQAVEKLFVTL 182 Query: 184 HALTRQQELTVLMITHKFHEVSAYADDVTVLRKGRLVGSARVAETSPDTLAHWMMGQARA 243 L + ++L I+HK E+ A TV+R GR+ G+ S +L+ M+G Sbjct: 183 RRLA-DEGCSILYISHKLDEIRALCHSATVMRGGRVTGNCDPRNESSASLSRMMIGDELV 241 Query: 244 EKAQVARPAVPVQAPVGLEVRDLTVNNDRGVAA-VRALSLQVRRGEIVGLAGISGNGQKE 302 + Q R ++ L V L++ A ++ + +VR GEIVG+AG+SGNGQ+E Sbjct: 242 -RLQRERNPESMRNERKLHVNRLSLPKAHLFATELKDIECEVRAGEIVGIAGVSGNGQQE 300 Query: 303 LVEALLGQ-RRSLLGEIRVEGAPYAATREEMRRLRVFAL-PEEPLRNACIAGMSVAENMA 360 L+ AL G+ +R+ I + RR L PEE L + +S+ NM Sbjct: 301 LLAALSGEDQRAAPHMIMLGSKAVGDLSPNPRRAAGLGLVPEERLGRGAVPTLSLTANML 360 Query: 361 LRNFDVAPFKRGGWRIDRSAMKRQAQALISAFNVKPPVPERPIGTLSGGNVQRAVLAREL 420 L + KRG ID +R A ++I F VK P+ P +LSGGN+Q+ ++ RE+ Sbjct: 361 LSHQKAPYVKRG--MIDFGFTRRAAASIIERFKVKAAGPDAPAKSLSGGNLQKFIVGREM 418 Query: 421 GEDGQDGAANVLIVANPVFGLDFASVADIHARLLQARARGAAVLLVSEDLDELLELSDRI 480 + V +VA P +G+D + A IH +L+ + G AVL++SE+LDEL L DR+ Sbjct: 419 -----ERKPAVFVVAQPTWGVDVGAAAQIHGEILKLKQEGCAVLVISEELDELFALCDRL 473 Query: 481 LVMTEGRIVHVAQDVAKEGADRAALGRWMAG 511 V+ +GR+ + + E A R +G WM+G Sbjct: 474 HVIAKGRL---SPSIPIEQATREQVGVWMSG 501 >gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 506 Score = 244 bits (623), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 169/497 (34%), Positives = 261/497 (52%), Gaps = 25/497 (5%) Query: 1 MHALELEIINAGKSFGSFRALDEVSLKIRAGTIHALLGENGAGKSTLVKGLVGYSPLDQG 60 M A L++ K+FG L V L++RAG +HALLGENGAGKSTL+K L G D G Sbjct: 1 MEAAMLQLTGIKKNFGPVTVLRGVDLEVRAGEVHALLGENGAGKSTLMKILCGIVRPDAG 60 Query: 61 SILADRREVDIRSARVPNQLGIGMVYQHFTLAPSLTVAENLLLARGDLPWRIRWG-SERA 119 I D + S R G+G+V+Q F+L P L +N+ LAR R RWG +RA Sbjct: 61 EIRIDGQPCRFDSYRAAIAGGVGVVFQEFSLIPYLDAVDNMFLAR---ELRSRWGWLQRA 117 Query: 120 VL----EEFMAKMPFKLSPERTVSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQE 175 + +E + ++ + + V LS ++Q +EI K L L R L+LDEPT+ LTP E Sbjct: 118 AMRRRAQEIIGQLGVAIPLDVPVCKLSVAQQQFVEIAKALALDARILVLDEPTATLTPAE 177 Query: 176 ADEVLGLMHALTRQQELTVLMITHKFHEVSAYADDVTVLRKGRLVGSARVAETSPDTLAH 235 + + +M +L R Q + ++ I+H E+ D +TVLR G V + AE L Sbjct: 178 VEHLFAVMRSL-RAQGVAIIFISHHLEEIFEICDRITVLRDGAYVATCATAEVDQARLVE 236 Query: 236 WMMGQARAEKAQVARPAV--PVQAPVGLEVRDLTVNNDRGVAAVRALSLQVRRGEIVGLA 293 M+G+ R E +PA + V LEV L + V+ Q+RRGEI+G A Sbjct: 237 MMVGR-RIENCFPPKPAKGGEGEGEVVLEVHALQLRRQAPVS-----QFQLRRGEILGFA 290 Query: 294 GISGNGQKELVEALLGQRRSLLGEIRVEGAPY-AATREEMRRLRVFALPEEPLRNACIAG 352 G+ G+G+ E V A+LG +L ++ + G P A + + + LPE I Sbjct: 291 GLVGSGRTETVLAMLGAHAALSCKLSMHGVPLRFADPAQALQAGIGLLPESRKEQGLITS 350 Query: 353 MSVAENMALRNFDVAPFKRGGWRIDRSAMKRQAQALISAFNVKPPVPERPIGTLSGGNVQ 412 S+ N++L N+ ++ GG +DR ++ +A + VK P + + TLSGGN Q Sbjct: 351 FSILHNVSLNNY--GKYRLGGLFLDRRREQQATEAAMQRVRVKAPGAQVRVDTLSGGNQQ 408 Query: 413 RAVLARELGEDGQDGAANVLIVANPVFGLDFASVADIHARLLQARARGAAVLLVSEDLDE 472 + V+AR + + A VLI P G+D + ++I+ + + A+G ++L++S +L E Sbjct: 409 KVVIARWI-----NHAMKVLIFDEPTRGIDVGAKSEIYQLMREFTAQGYSILMISSELPE 463 Query: 473 LLELSDRILVMTEGRIV 489 ++ ++DR+ V G IV Sbjct: 464 VVGMADRVCVFRGGGIV 480 >gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 521 Score = 233 bits (593), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 171/485 (35%), Positives = 256/485 (52%), Gaps = 28/485 (5%) Query: 13 KSFGSFRALDEVSLKIRAGTIHALLGENGAGKSTLVKGLVGYSPLDQGSILADRREVDIR 72 KSFG+ AL ++ L IR G IHAL+GENGAGKSTL+K L G DQG IL D R V +R Sbjct: 14 KSFGATLALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDQGEILLDGRPVALR 73 Query: 73 SARVPNQLGIGMVYQHFTLAPSLTVAENLLLARGDLPWRIRWG-----SERAVLEEFMAK 127 GI ++YQ +AP+++VA N+ + R R G + R+ + + + Sbjct: 74 DPGASRAAGINLIYQELAVAPNISVAANVFMGS---ELRTRLGLIDHAAMRSRTDAVLRQ 130 Query: 128 MPFKLSPERTVSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQEADEVLGLMHALT 187 + LS E+Q++EI + L R R +I+DEPT+ L+ +E +++ ++ L Sbjct: 131 LGAGFGASDLAGRLSIAEQQQVEIARALVHRSRIVIMDEPTAALSERETEQLFNVVRRL- 189 Query: 188 RQQELTVLMITHKFHEVSAYADDVTVLRKGRLVGSARVAETSPDTLAHWMMGQARAEKAQ 247 R + L ++ I+H+ EV A AD VTVLR G VG E + + M+G++ +E Q Sbjct: 190 RDEGLAIIYISHRMAEVYALADRVTVLRDGSFVGELVRDEIDSERIVQMMVGRSLSEFYQ 249 Query: 248 VAR--PAVPVQAPVGLEVRDLTVNNDRGVAAVRALSLQVRRGEIVGLAGISGNGQKELVE 305 R PA Q P ++VR L +R S VR GE++G AG+ G G+ EL Sbjct: 250 HQRIAPADAAQLPTVMQVRALAGGK------IRPASFDVRAGEVLGFAGLVGAGRTELAR 303 Query: 306 ALLGQRRSLLGEIRVEGAPYAATREE-MRRLRVFALPEEPLRNACIAGMSVAENMALRNF 364 L G G+I +EG P + R + +PE+ M+VA N + Sbjct: 304 LLFGADPRSGGDILLEGRPVHIDQPRAAMRAGIAYVPEDRKGQGLFLQMAVAANATM--- 360 Query: 365 DVAP-FKRGGWRIDRSAMKRQAQALISAFNVKPPVPERPIGTLSGGNVQRAVLARELGED 423 +VA R G RS + A+A I NVK PE P+G LSGGN Q+ +LAR L Sbjct: 361 NVASRHTRLGLVRSRS-LGGVARAAIQRLNVKVAHPETPVGKLSGGNQQKVLLARWL--- 416 Query: 424 GQDGAANVLIVANPVFGLDFASVADIHARLLQARARGAAVLLVSEDLDELLELSDRILVM 483 + A VLI+ P G+D + ++I+ + + ++G AV+++S +L E++ + DR+LVM Sbjct: 417 --EIAPKVLILDEPTRGVDIYAKSEIYQLVHRLASQGVAVVVISSELPEVIGICDRVLVM 474 Query: 484 TEGRI 488 EG I Sbjct: 475 REGMI 479 >gi|300310382|ref|YP_003774474.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 520 Score = 225 bits (573), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 165/489 (33%), Positives = 256/489 (52%), Gaps = 32/489 (6%) Query: 10 NAGKSFGSFRALDEVSLKIRAGTIHALLGENGAGKSTLVKGLVGYSPLDQGSILADRREV 69 N K F ALD ++ AG +HAL+GENGAGKSTL+K L G D G IL D + V Sbjct: 27 NVCKRFPGVLALDNCQFELAAGEVHALMGENGAGKSTLMKILSGVYQRDSGDILLDGKPV 86 Query: 70 DIRSARVPNQLGIGMVYQHFTLAPSLTVAENLLLARGDLPWRIRWGSERAVLEE---FMA 126 +I R LGIG+++Q L L+ A+N+ + R + E + + A Sbjct: 87 EITEPRQAQALGIGIIHQELNLMNHLSAAQNIFIGREPRKAMGLFIDEDELNRQAAAIFA 146 Query: 127 KMPFKLSPERTVSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQEADEVLGLMHAL 186 +M + P V L+ +Q +EI K L R LI+DEPT+ L E E+ ++ L Sbjct: 147 RMRLDMDPSTPVGELTVARQQMVEIAKALSFDSRVLIMDEPTAALNNAEIAELFRIIRDL 206 Query: 187 TRQQELTVLMITHKFHEVSAYADDVTVLRKGRLVGSARVAETSPDTLAHWMMGQARAEKA 246 + Q + ++ I+HK E+ AD V+V+R G+ + + + ETS DT+ M+G+A + Sbjct: 207 -QAQGVGIVYISHKMDELRQIADRVSVMRDGKYIATVPMQETSMDTIISMMVGRALDGEQ 265 Query: 247 QVARPAVPVQAPVGLEVRDLTVNNDRGVAAVRALSLQVRRGEIVGLAGISGNGQKELVEA 306 ++ P + V LEVR L +RG A+R +S +R+GEI+G AG+ G G+ E+ A Sbjct: 266 RI--PPDTSRNDVVLEVRGL----NRG-RAIRDVSFTLRKGEILGFAGLMGAGRTEVARA 318 Query: 307 LLGQRRSLLGEIRVEG------APYAATREEMRRLRVFALPEEPLRNACIAGMSVAENMA 360 + G GEI + G +P A + L E+ GM V N+A Sbjct: 319 IFGADPLEAGEIIIHGGKAVIKSPADAVAHG-----IGYLSEDRKHFGLAVGMDVQANIA 373 Query: 361 LRNFDVAPFKRGGWRIDRSAMKRQAQALISAFNVKPPVPERPIGTLSGGNVQRAVLAREL 420 L + + F R G+ +D+ A++ AQ + +K P E+ LSGGN Q+ V+A+ L Sbjct: 374 LSS--MGRFTRVGF-MDQRAIREAAQMYVRQLAIKTPSVEQQARLLSGGNQQKIVIAKWL 430 Query: 421 GEDGQDGAANVLIVANPVFGLDFASVADIHARLLQARA-RGAAVLLVSEDLDELLELSDR 479 D ++L P G+D + ++I+ +LL A A +G A++++S +L E+L +S R Sbjct: 431 LRD-----CDILFFDEPTRGIDVGAKSEIY-KLLDALAEQGKAIVMISSELPEVLRMSHR 484 Query: 480 ILVMTEGRI 488 +LVM EGRI Sbjct: 485 VLVMCEGRI 493 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,475,658 Number of extensions: 58608 Number of successful extensions: 801 Number of sequences better than 1.0e-08: 128 Number of HSP's gapped: 547 Number of HSP's successfully gapped: 163 Length of query: 522 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 432 Effective length of database: 1,193,720 Effective search space: 515687040 Effective search space used: 515687040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)