BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0052.p (234 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310738|ref|YP_003774830.1| transcription regulator protein... 474 e-135 gi|300311999|ref|YP_003776091.1| GntR family transcription regul... 83 2e-17 gi|300311599|ref|YP_003775691.1| transcription regulator protein... 73 2e-14 gi|300314040|ref|YP_003778132.1| transcription regulator protein... 69 2e-13 >gi|300310738|ref|YP_003774830.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 474 bits (1221), Expect = e-135, Method: Compositional matrix adjust. Identities = 233/234 (99%), Positives = 234/234 (100%) Query: 1 MTVTLANALAEQVYHRLKDDIFSFRLLPGDHFTETEMAQRQGVSRTPLRDALFRLQREGY 60 MTVTLANALAEQVYHRLKDDIFSFRLLPGD+FTETEMAQRQGVSRTPLRDALFRLQREGY Sbjct: 1 MTVTLANALAEQVYHRLKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGY 60 Query: 61 LEVGFRRGWKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQPEASAELTQLNAIWLAEPDA 120 LEVGFRRGWKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQPEASAELTQLNAIWLAEPDA Sbjct: 61 LEVGFRRGWKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQPEASAELTQLNAIWLAEPDA 120 Query: 121 RQTDAVKVAQLDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRIDATYEEH 180 RQTDAVKVAQLDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRIDATYEEH Sbjct: 121 RQTDAVKVAQLDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRIDATYEEH 180 Query: 181 GKILQLIAKRKATEAQILLRAHITQSKLEVRKITIWMLAEARQLQEPEAALAQQ 234 GKILQLIAKRKATEAQILLRAHITQSKLEVRKITIWMLAEARQLQEPEAALAQQ Sbjct: 181 GKILQLIAKRKATEAQILLRAHITQSKLEVRKITIWMLAEARQLQEPEAALAQQ 234 >gi|300311999|ref|YP_003776091.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 82.8 bits (203), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/201 (30%), Positives = 99/201 (49%), Gaps = 14/201 (6%) Query: 10 AEQVYHRLKDDIFSFRLLPGDHFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFRRGW 69 AE + +++ I +L PG H ET +A+ GVSRTP+R+AL +L G +E+ RRG Sbjct: 8 AEALRESIEELIAVSKLSPGQHLDETSLAEEFGVSRTPIREALIQLASMGIVEMRPRRGA 67 Query: 70 KVCPIDFDRLDNLYDLRIVLEMAALDKLCSQ-------PEASAELTQLNAIWLAEPDARQ 122 V I +L ++++ MA + +C + P AEL + A DA Sbjct: 68 IVAEIGPQQLIEMFEV-----MAEFEAMCGRLAARRMTPAEHAELLAAHQACQAARDAND 122 Query: 123 TDAVKVAQLDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRIDATYEEHGK 182 DA L+EAFH ++ A + N + + ++R RRL + R+ ++++EH Sbjct: 123 PDAYFY--LNEAFHDHIYAGSHNGFLADQARALHRRLRPYRRLQLRVRDRLKSSFDEHQA 180 Query: 183 ILQLIAKRKATEAQILLRAHI 203 ++ I A + LLR HI Sbjct: 181 VVDAIISGDAEKTVDLLREHI 201 >gi|300311599|ref|YP_003775691.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 243 Score = 73.2 bits (178), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 101/213 (47%), Gaps = 13/213 (6%) Query: 6 ANALAEQVYHRLKDDIFSFRLLPGDHFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGF 65 L+E V+ +++ I + PG +E E+A+ G+SR PLR+A+ RL+ + L Sbjct: 14 GETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRVP 73 Query: 66 RRGWKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQPEASAELTQLNAIWLAEPDARQTDA 125 G +V + + L L+ +R LE A +L +Q + AEL +L + D + D Sbjct: 74 HVGARVVSLTLEGLVELFQIRESLEGMAC-RLAAQRMSRAELDELRRVL----DTHEKDE 128 Query: 126 VKVA-------QLDEAFHTNLVAAAGNEEMTRV-HTEVTEKIRIVRRLDFLKKKRIDATY 177 A + D FH ++ A+GN+ +TR+ E+ + R+ R R + Sbjct: 129 AFQAGRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSATPHRPRQAF 188 Query: 178 EEHGKILQLIAKRKATEAQILLRAHITQSKLEV 210 EH +IL +A A +L+R HI S+ + Sbjct: 189 AEHHRILDALADGDGELADLLMRRHIGASRRNI 221 >gi|300314040|ref|YP_003778132.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 69.3 bits (168), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 98/216 (45%), Gaps = 15/216 (6%) Query: 9 LAEQVYHRLKDDIFSFRLLPGDHFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFRRG 68 L EQVYH + D I + L P + T+ +A++ GVSR P+ A L+REG++E R+G Sbjct: 10 LIEQVYHAILDAICTGALAPNEKITQEGLAEQLGVSRQPILQAFQILKREGFIEDAGRKG 69 Query: 69 WKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQPEASAEL--------TQLNAIWLAEPDA 120 V +D RL LY +R VL+ A Q ++ A L L A D Sbjct: 70 VMVTALDPQRLMQLYQVRAVLDGLAARSTAEQWKSDAALRAAGERAGRALIEAGRALADM 129 Query: 121 RQTDAVKVAQLDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRID---ATY 177 R A +A +D FH + + GN + + + IR R + + + A + Sbjct: 130 RDLSARILADMD--FHQFIYRSCGNPMIGQTTALHWQHIR--RAMGAILSSEVRSHLAVW 185 Query: 178 EEHGKILQLIAKRKATEAQILLRAHITQSKLEVRKI 213 EEH ILQ + + + A L R H + + ++ Sbjct: 186 EEHEAILQAMLEGRPALADKLARQHAESAAAHLARV 221 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.134 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 605,314 Number of extensions: 22419 Number of successful extensions: 105 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 99 Number of HSP's successfully gapped: 7 Length of query: 234 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 152 Effective length of database: 1,231,600 Effective search space: 187203200 Effective search space used: 187203200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)