BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0036.p
         (282 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310723|ref|YP_003774815.1| hypothetical protein Hsero_1391...   568   e-163

>gi|300310723|ref|YP_003774815.1| hypothetical protein Hsero_1391
           [Herbaspirillum seropedicae SmR1]
          Length = 285

 Score =  568 bits (1463), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 281/282 (99%), Positives = 281/282 (99%)

Query: 1   MTLTSLDYFASLVRQDDSIPLFESALTLGQDFYPEMDFAEEEMALDTLAAKLKQRLPSDA 60
           MTLTSLDYFASLVRQDDSIPLFESALTLGQDFYPEMDFAEEEMALDTLAAKLKQRLPSDA
Sbjct: 4   MTLTSLDYFASLVRQDDSIPLFESALTLGQDFYPEMDFAEEEMALDTLAAKLKQRLPSDA 63

Query: 61  SQIQKLRMLNHFFFQEMAFAGNVNNYYDPDNSYIHRVLSTRRGIPISLAVVYIELAQHIG 120
           SQIQKLRMLNHFFFQEMAFAGNVNNYYDPDNSYIHRVLSTRRGIPISLAVVYIELAQHIG
Sbjct: 64  SQIQKLRMLNHFFFQEMAFAGNVNNYYDPDNSYIHRVLSTRRGIPISLAVVYIELAQHIG 123

Query: 121 LDMKGVSFPGHFLMKLSVQSGEIVLDPMNGASLSREELEERLEPFLAHQPDEEFGDELPL 180
           LDMKGVSFPGHFLMKLSVQSGEIVLDPMNGASLSREELEERLEPFL HQPDEEFGDELPL
Sbjct: 124 LDMKGVSFPGHFLMKLSVQSGEIVLDPMNGASLSREELEERLEPFLTHQPDEEFGDELPL 183

Query: 181 AAYLRAAHPREILARMLRNLKAIFMESQRWQQVLDVQERLVILLPEEITEKRDRGLAYAN 240
           AAYLRAAHPREILARMLRNLKAIFMESQRWQQVLDVQERLVILLPEEITEKRDRGLAYAN
Sbjct: 184 AAYLRAAHPREILARMLRNLKAIFMESQRWQQVLDVQERLVILLPEEITEKRDRGLAYAN 243

Query: 241 LGQAQAALEDLEAYLALRPHAEDAPNLREMLPDLREALRKPN 282
           LGQAQAALEDLEAYLALRPHAEDAPNLREMLPDLREALRKPN
Sbjct: 244 LGQAQAALEDLEAYLALRPHAEDAPNLREMLPDLREALRKPN 285


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 772,640
Number of extensions: 27980
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 198
Effective length of database: 1,222,130
Effective search space: 241981740
Effective search space used: 241981740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)