BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0032.p
         (231 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310720|ref|YP_003774812.1| cytochrome c553 protein [Herbas...   407   e-115
gi|300309495|ref|YP_003773587.1| cytochrome c553 protein [Herbas...   100   1e-22

>gi|300310720|ref|YP_003774812.1| cytochrome c553 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 252

 Score =  407 bits (1045), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/231 (97%), Positives = 227/231 (98%)

Query: 1   MACSLAAAAAPETAPAAPAAIAGMAERMAACTACHGKQGRATADGYYPRIAGKPEAYLLN 60
           MACSLAAAAAPE APAAPAAIAGMAERMAACTACHGKQGRATADGYYPRIAGKPEAYLLN
Sbjct: 22  MACSLAAAAAPEAAPAAPAAIAGMAERMAACTACHGKQGRATADGYYPRIAGKPEAYLLN 81

Query: 61  QLQSFRDGQRRYPMMNYLLANLSDDYLQQIARFFADQHPPYPPPASNEASATVLERGRRL 120
           QLQSFRDGQRRYPMMNYLLANLSDDYLQQIARFFADQHPPYPPPASNEASATVLERGRRL
Sbjct: 82  QLQSFRDGQRRYPMMNYLLANLSDDYLQQIARFFADQHPPYPPPASNEASATVLERGRRL 141

Query: 121 VTEGDPQRRLPACVACHAPSLGGVQPGIPGLLGLPRDYINAQLGAWRNGDRTAKTPDCMA 180
           VTEGDPQRRLPAC ACHAPSLGGVQPGIPGLLGLPRDYINAQLGAWRNGDRTAKTPDCMA
Sbjct: 142 VTEGDPQRRLPACAACHAPSLGGVQPGIPGLLGLPRDYINAQLGAWRNGDRTAKTPDCMA 201

Query: 181 AVARALSPEEINAASSWLSAQAVPTDYAPAPTLPAPLPQQCGSQPQSGVQR 231
           AVARALSPEEINAASSWLSAQAVP DYAPAP LP+PLPQQCGSQPQSGVQR
Sbjct: 202 AVARALSPEEINAASSWLSAQAVPADYAPAPALPSPLPQQCGSQPQSGVQR 252


>gi|300309495|ref|YP_003773587.1| cytochrome c553 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 220

 Score =  100 bits (248), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 92/175 (52%), Gaps = 7/175 (4%)

Query: 25  AERMAACTACHGKQGRATADGYYPRIAGKPEAYLLNQLQSFRDGQRRYPMMNYLLANLSD 84
           A  + AC +CHG  G +T     P++AG+ EAY+  QL +FR   R  P+M+ +   LSD
Sbjct: 50  ARNIVACVSCHGAAGNSTIT-QNPKLAGQHEAYIAKQLLNFRTPDRNNPVMSPMAKALSD 108

Query: 85  DYLQQIARFFADQHPPYPPPASNEASATVLERGRRLVTEGDPQRRLPACVACHAPSLGGV 144
           + +  +A F A Q  P P  A N+     ++ G+ +   G   + +PAC  CH+P+  G+
Sbjct: 109 EDIHNVAAFLAAQ-APKPGAAKNK---DTIDLGKHIWRAGIAAKNVPACAGCHSPNGAGI 164

Query: 145 QPGIPGLLGLPRDYINAQLGAWRNGDRTAKTPDCMAAVARALSPEEINAASSWLS 199
               P L G  +DY  AQL  +R G RT      M  ++  LS +EI A + +++
Sbjct: 165 PAQYPRLAGQHQDYTVAQLTNFRGGARTNSVQ--MTTISERLSDKEIKAVADYIA 217


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 699,933
Number of extensions: 30187
Number of successful extensions: 132
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 2
Length of query: 231
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,231,600
Effective search space: 183508400
Effective search space used: 183508400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)