BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0031.p (431 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310719|ref|YP_003774811.1| cytochrome c protein [Herbaspir... 869 0.0 gi|300312638|ref|YP_003776730.1| cytochrome c precursor protein ... 298 8e-82 gi|300313762|ref|YP_003777854.1| cytochrome c precursor protein ... 293 2e-80 gi|300313847|ref|YP_003777939.1| membrane-bound D-gluconate 2-de... 252 3e-68 gi|300310653|ref|YP_003774745.1| cytochrome protein [Herbaspiril... 243 2e-65 >gi|300310719|ref|YP_003774811.1| cytochrome c protein [Herbaspirillum seropedicae SmR1] Length = 431 Score = 869 bits (2245), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/431 (99%), Positives = 428/431 (99%) Query: 1 MKRTHFFKSLGVLAALLIALPAAVIGWQWLGPEERGAATPAPDPTHQLAQGQYLARAGNC 60 MKRTHFFKSLGVLAALLIALPAAVIGWQWLGPEERGAATPAPDPT QLAQGQYLARAGNC Sbjct: 1 MKRTHFFKSLGVLAALLIALPAAVIGWQWLGPEERGAATPAPDPTRQLAQGQYLARAGNC 60 Query: 61 MACHTARGGAPYAGGRAIASPFGTLYTSNITPDKTTGIGQWSADDFWRALHHGRGKEGQF 120 MACHTARGGAPYAGGRAIASPFGTLYTSNITPDKTTGIGQWSADDFWRALHHGRGKEGQF Sbjct: 61 MACHTARGGAPYAGGRAIASPFGTLYTSNITPDKTTGIGQWSADDFWRALHHGRGKEGQF 120 Query: 121 LYPAFPYTSYTRLSRADSDALFAYLQSLPPVARANQTHALRFPYDQRMLLGLWRALYFTP 180 LYPAFPYTSYTRLSRADSDALFAYLQSLPPVARANQ H LRFPYDQRMLLGLWRALYFTP Sbjct: 121 LYPAFPYTSYTRLSRADSDALFAYLQSLPPVARANQAHTLRFPYDQRMLLGLWRALYFTP 180 Query: 181 QSYQPDPRQDAQWNRGAYLVQGAGHCSACHSARNRLGASIEPLALAGGVIPALQWYAPPL 240 QSYQPDPRQDAQWNRGAYLVQGAGHCSACHSARNRLGASIEPLALAGGVIPALQWYAPPL Sbjct: 181 QSYQPDPRQDAQWNRGAYLVQGAGHCSACHSARNRLGASIEPLALAGGVIPALQWYAPPL 240 Query: 241 HGGADGLQDWSTADIAALLKTGVSPHAVTLGPMSEIVGRSLQYLNDADVSAMAVYLKSLP 300 HGGADGLQDWSTADIAALLKTGVSPHAVTLGPMSEIVGRSLQYLNDADVSAMAVYLKSLP Sbjct: 241 HGGADGLQDWSTADIAALLKTGVSPHAVTLGPMSEIVGRSLQYLNDADVSAMAVYLKSLP 300 Query: 301 ASAADDAARPASVEPAEAERIMKQGKQLYGTLCVDCHGGKGQGSAPDYPPLAGNRAIAGP 360 ASAADDAARPASVEPAEAERIMKQGKQLYGTLCVDCHGGKGQGSAPDYPPLAGNRAIAGP Sbjct: 301 ASAADDAARPASVEPAEAERIMKQGKQLYGTLCVDCHGGKGQGSAPDYPPLAGNRAIAGP 360 Query: 361 HPANAVRAVLNGGFPPSTAGNPYPFGMPPFGPQLSDQEVAAVVSYVRNSWGNQGGLVSAA 420 HPANAVRAVLNGGFPPSTAGNPYPFGMPPFGPQLSDQEVAAVVSYVRNSWGNQGGLVSAA Sbjct: 361 HPANAVRAVLNGGFPPSTAGNPYPFGMPPFGPQLSDQEVAAVVSYVRNSWGNQGGLVSAA 420 Query: 421 EVNRYRSVPLD 431 EVNRYRSVPLD Sbjct: 421 EVNRYRSVPLD 431 >gi|300312638|ref|YP_003776730.1| cytochrome c precursor protein [Herbaspirillum seropedicae SmR1] Length = 441 Score = 298 bits (762), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 176/402 (43%), Positives = 235/402 (58%), Gaps = 24/402 (5%) Query: 41 APDPTHQLAQ-GQYLARAGNCMACHTARGGAPYAGGRAIASPFGTLYTSNITPDKTTGIG 99 AP QL Q G+YLA+AG+C+ACHTA+GG P+AGG AIA+P GT+Y+SNITPDK GIG Sbjct: 29 APSADQQLVQRGEYLAKAGDCVACHTAKGGKPFAGGLAIATPIGTVYSSNITPDKENGIG 88 Query: 100 QWSADDFWRALHHGRGKEGQFLYPAFPYTSYTRLSRADSDALFAY-LQSLPPVARANQTH 158 +S +DF RAL HG K+G LYPA PY SY ++ AD AL+AY + + N+ Sbjct: 89 NYSEEDFDRALRHGIRKDGASLYPAMPYPSYAKVKPADVKALYAYFMHGVQADPAPNRGV 148 Query: 159 ALRFPYDQRMLLGLWRALYFTPQSYQPDPRQDAQWNRGAYLVQGAGHCSACHSARNRLGA 218 + +P R L +WR + F P P ++ RG YLV+G GHC ACH+ R +G Sbjct: 149 DITWPLSMRWPLSIWRKV-FAPAVAVDGPEDNSPLVRGQYLVEGLGHCGACHTPRG-VGM 206 Query: 219 SIEPLA------LAGGVIPALQWYAPPLHG-GADGLQDWSTADIAALLKTGVSPHAVTLG 271 + L+ L+GGVI + A L G G DGL +WS ADI A LKTG + H+ G Sbjct: 207 QEKALSNDSSQFLSGGVIDG--YLANNLRGDGRDGLGNWSEADIVAFLKTGRNSHSAAFG 264 Query: 272 PMSEIVGRSLQYLNDADVSAMAVYLKSL-------PASAADDAARPASVEPAEAERIMKQ 324 M+++V S QY+ + D+SAMA YLKSL PA A DD A + ++ Sbjct: 265 GMADVVANSTQYMTEEDLSAMAKYLKSLKPVKDGTPALAYDDKTHQALRKGSD----QSP 320 Query: 325 GKQLYGTLCVDCHGGKGQGSAPDYPPLAGNRAIAGPHPANAVRAVLNGGFPPSTAGNPYP 384 G + C CH G+G +P LA + + +PA+ +R VL G P T P Sbjct: 321 GAMAFLNNCAACHRSSGKGYDETFPSLALSPTVNAENPASLIRIVLEGAEMPWTHKAPTQ 380 Query: 385 FGMPPFGPQLSDQEVAAVVSYVRNSWGNQGGLVSAAEVNRYR 426 F MP FG +LSDQEVA VV+++R+SWGNQ VSA++V + R Sbjct: 381 FAMPAFGSRLSDQEVAEVVTFIRSSWGNQASSVSASDVAKVR 422 >gi|300313762|ref|YP_003777854.1| cytochrome c precursor protein [Herbaspirillum seropedicae SmR1] Length = 482 Score = 293 bits (749), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 167/396 (42%), Positives = 231/396 (58%), Gaps = 16/396 (4%) Query: 46 HQLAQGQYLARAGNCMACHTARGGAPYAGGRAIASPFGTLYTSNITPDKTTGIGQWSADD 105 Q+ +G YLARAG+C+ACHT++GGAP+AGG A+ASP G +Y++NITPDK GIG WS +D Sbjct: 81 QQILRGAYLARAGDCVACHTSKGGAPFAGGLALASPIGAIYSTNITPDKQHGIGDWSYED 140 Query: 106 FWRALHHGRGKEGQFLYPAFPYTSYTRLSRADSDALFAYL-QSLPPVARANQTHALRFPY 164 F R + G K G +YPA PY SY+RL+ D AL+AY +++PP A+ N+ + + +P Sbjct: 141 FARLMRTGVTKAGYTVYPAMPYPSYSRLTDEDMQALYAYFSKAVPPSAQENRANDIPWPL 200 Query: 165 DQRMLLGLWRALYF-TPQSYQPDPRQDAQWNRGAYLVQGAGHCSACHSAR------NRLG 217 R L LWR ++ TP Y P D + RGAYLV+G GHC +CHS R L Sbjct: 201 SMRWPLALWRKVFAPTPAPYTPAAGSDQELARGAYLVEGLGHCGSCHSPRAVTMQEKALK 260 Query: 218 ASIEPLALAGGVIPALQWYAPPL---HGGADGLQDWSTADIAALLKTGVSPHAVTLGPMS 274 L L+GG + W P L HGG G+ WS AD+ L+TG + + + G M+ Sbjct: 261 EDGGRLFLSGGQV-VDGWSVPSLRNEHGG--GIAGWSQADLVEFLRTGRNQYTASFGAMN 317 Query: 275 EIVGRSLQYLNDADVSAMAVYLKSLP--ASAADDAARPASVEPAEAERIMKQGKQLYGTL 332 +++ S+QY++DAD++AMA YL SLP AA A+ + A R G ++Y Sbjct: 318 DVIEDSMQYMSDADLNAMARYLLSLPPRQQAAPYRYDSATAQAAYDGRPDGPGARIYLDR 377 Query: 333 CVDCHGGKGQGSAPDYPPLAGNRAIAGPHPANAVRAVLNGGFPPSTAGNPYPFGMPPFGP 392 C CH G G +P LAGN + +A+R +L GG PSTA M P+ Sbjct: 378 CAACHRSNGTGYGKAFPALAGNPVLQTSDATSAIRIILQGGRQPSTASATAGLVMAPYAQ 437 Query: 393 QLSDQEVAAVVSYVRNSWGNQGGLVSAAEVNRYRSV 428 L DQ+VA V SY++ +WGN+GG +AAEV + R Sbjct: 438 LLDDQQVAEVTSYIQTAWGNRGGTTTAAEVAKVRKT 473 >gi|300313847|ref|YP_003777939.1| membrane-bound D-gluconate 2-dehydrogenase cytochrome c subunit [Herbaspirillum seropedicae SmR1] Length = 423 Score = 252 bits (644), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 148/392 (37%), Positives = 210/392 (53%), Gaps = 18/392 (4%) Query: 48 LAQGQYLARAGNCMACHTARGGAPYAGGRAIASPFGTLYTSNITPDKTTGIGQWSADDFW 107 +A+GQYLARAG+CMACH+A G Y+GG AI S G +Y++NITPDK GIG +S F Sbjct: 32 VARGQYLARAGDCMACHSAAGKPAYSGGLAIDSGHGIIYSTNITPDKEHGIGNYSEAQFS 91 Query: 108 RALHHGRGKEGQFLYPAFPYTSYTRLSRADSDALFAY-LQSLPPVARANQTHALRFPYDQ 166 A+ HG +G LYPA PY SY ++S D AL+ Y +Q + PVA ++ FP++ Sbjct: 92 AAVRHGVRADGTQLYPAMPYPSYAKVSDEDIHALYTYFMQGVQPVASTPPASSMSFPFNI 151 Query: 167 RMLLGLWRALYFTPQSYQPDPRQDAQWNRGAYLVQGAGHCSACHSAR-----NRLGASIE 221 R + LW + + ++ A+ RGAYLV+G GHC +CH+ R + S + Sbjct: 152 RWGMKLWNVFFANDKPFREQDGWSAEIKRGAYLVEGLGHCGSCHTPRGVAMNEKASDSSQ 211 Query: 222 PLALAGGVIPALQWYAPPLHGGADGLQDWSTADIAALLKTGVSPHAVTLGPMSEIVGRSL 281 L+GG + W P L G+ WS DI L+TG + A G MS +V S Sbjct: 212 AQFLSGGDLNG--WAVPSLR----GMPHWSAQDIVDYLQTGRNKTASVAGEMSLVVEHST 265 Query: 282 QYLNDADVSAMAVYLKSLPASAADDAAR------PASVEPAEAERIMKQGKQLYGTLCVD 335 +L D+ AMA YLK+L A+ + R A+V A + + G++LY C Sbjct: 266 SHLKREDLQAMAAYLKTLSPVASSGSGRVIPQGVDATVSKLTAAKDLTLGERLYLDNCAA 325 Query: 336 CHGGKGQGSAPDYPPLAGNRAIAGPHPANAVRAVLNGGFPPSTAGNPYPFGMPPFGPQLS 395 CH G+G+ +P L G + +P+ + +L G PST P MP F +LS Sbjct: 326 CHFVTGRGAPGIFPVLDGATVVNAENPSALLHVILAGARTPSTEKAPSILVMPGFAHRLS 385 Query: 396 DQEVAAVVSYVRNSWGNQGGLVSAAEVNRYRS 427 D+E AA+ ++VR WGN G VS EV + R+ Sbjct: 386 DEEAAALATFVRQGWGNHAGKVSEREVGKLRA 417 >gi|300310653|ref|YP_003774745.1| cytochrome protein [Herbaspirillum seropedicae SmR1] Length = 974 Score = 243 bits (620), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 160/408 (39%), Positives = 224/408 (54%), Gaps = 24/408 (5%) Query: 38 ATPAPD--PTHQLAQGQYLARAGNCMACHTARGGAPYAGGRAIASPFGTLYTSNITPDKT 95 A P PD + +G+ +A AG+C CHTA GGA AGG A+ +PFGT+Y++NITPD+ Sbjct: 575 ARPDPDLYSAATIERGRRVALAGDCAVCHTAPGGATNAGGHALQTPFGTVYSTNITPDEH 634 Query: 96 TGIGQWSADDFWRALHHGRGKEGQFLYPAFPYTSYTRLSRADSDALFAYLQSLPPVARAN 155 TGIG WS F RA+ G ++G+ LYPAFPYT++ ++S AD +L+AYL + P VA Sbjct: 635 TGIGNWSYAAFERAMREGIHRDGRHLYPAFPYTAFAKISEADMQSLYAYLMAQPAVASTP 694 Query: 156 QTHALRFPYDQRMLLGLWRALYFTPQSYQPDPRQDAQWNRGAYLVQGAGHCSACHSARNR 215 + LRFP++ R LL W L+ PQ +QPDP + WNRGAYLV+GAGHC+ACHS RN Sbjct: 695 PANDLRFPFNLRPLLAGWNTLFHDPQVFQPDPARSDLWNRGAYLVEGAGHCAACHSPRNA 754 Query: 216 LGASIEPLA-LAGGVIPALQWYAPPLHGGADGLQDWSTADIAALLKTGVSP-HAVTLGPM 273 LGA L GG++ W AP L + W+ ++ A L+TG S H + GPM Sbjct: 755 LGAEKGGRHYLGGGMVDG--WEAPALTALSKSPTPWTEEELFAYLRTGFSARHGIAAGPM 812 Query: 274 SEIVGRSLQYLNDADVSAMAVYLKSLPASAADDAARPASVEPAEAE-----RIMKQGKQL 328 + +V L L DV A+A YL S + AA A P A+A R G++L Sbjct: 813 APVVAE-LAQLPPGDVRAIAHYLASFQSGAASSPAAPVPASAAQAPSPAELRSRANGQRL 871 Query: 329 YGTLCVDCHGGKGQGSAPDY----PPLAGNRAIAGPHPANAVRAVLNGGFPPSTAGNPYP 384 + C CH +G+ P P L N + P N V +L+G P+ NP Sbjct: 872 FAGACAACH---QEGTGPTLFGVKPSLRVNTNLHSDTPDNLVHVILHGIREPA---NPAL 925 Query: 385 FGMPPFGPQLSDQEVAAVVSYVRNSW--GNQGGLVSAAEVNRYRSVPL 430 MP F SD ++ +++Y+R+ + G A + R R++P+ Sbjct: 926 GYMPGFANSFSDAQMVDLLAYLRSEFAAGKPAWQGVEAAIARSRAMPM 973 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,474,005 Number of extensions: 65995 Number of successful extensions: 245 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 204 Number of HSP's successfully gapped: 8 Length of query: 431 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 343 Effective length of database: 1,203,190 Effective search space: 412694170 Effective search space used: 412694170 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)