BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0019.p
         (165 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310708|ref|YP_003774800.1| cell wall invasion-associated h...   343   4e-96
gi|300312625|ref|YP_003776717.1| transmembrane protein [Herbaspi...   132   1e-32

>gi|300310708|ref|YP_003774800.1| cell wall invasion-associated
           hydrolase [Herbaspirillum seropedicae SmR1]
          Length = 200

 Score =  343 bits (880), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 165/165 (100%), Positives = 165/165 (100%)

Query: 1   LAAQDLPPPQATSPQAQQLISKTNLAIARLQDITNRASELATQALAMLGINYRYGGNSPD 60
           LAAQDLPPPQATSPQAQQLISKTNLAIARLQDITNRASELATQALAMLGINYRYGGNSPD
Sbjct: 36  LAAQDLPPPQATSPQAQQLISKTNLAIARLQDITNRASELATQALAMLGINYRYGGNSPD 95

Query: 61  TGLDCSGLVRYVFKEAWGTDLPRTSLEISRVGEKIGKDNLQPGDLVFYNTLRRGFSHVGI 120
           TGLDCSGLVRYVFKEAWGTDLPRTSLEISRVGEKIGKDNLQPGDLVFYNTLRRGFSHVGI
Sbjct: 96  TGLDCSGLVRYVFKEAWGTDLPRTSLEISRVGEKIGKDNLQPGDLVFYNTLRRGFSHVGI 155

Query: 121 YLGDGKFIHSPSAGGQVRIESMDESYWKKRFNGARRIAAGEEESK 165
           YLGDGKFIHSPSAGGQVRIESMDESYWKKRFNGARRIAAGEEESK
Sbjct: 156 YLGDGKFIHSPSAGGQVRIESMDESYWKKRFNGARRIAAGEEESK 200


>gi|300312625|ref|YP_003776717.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score =  132 bits (332), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 58/122 (47%), Positives = 83/122 (68%)

Query: 34  TNRASELATQALAMLGINYRYGGNSPDTGLDCSGLVRYVFKEAWGTDLPRTSLEISRVGE 93
           T   +E+A  AL+++   YR+GG +P  GLDCSG+V Y+F +A    +  ++ +I+R G 
Sbjct: 64  TENGNEVALYALSLIDTGYRFGGKNPSAGLDCSGMVSYIFGQAANYRISGSAADIARQGR 123

Query: 94  KIGKDNLQPGDLVFYNTLRRGFSHVGIYLGDGKFIHSPSAGGQVRIESMDESYWKKRFNG 153
           +I    L+ GDLVF+NT+ R FSHVGIYLGDG+F+H+PS  G+V I  MD  Y+ +RF  
Sbjct: 124 QIDPSQLRAGDLVFFNTMNRPFSHVGIYLGDGRFVHAPSTNGKVHITRMDNPYFSRRFEM 183

Query: 154 AR 155
           AR
Sbjct: 184 AR 185


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 485,548
Number of extensions: 20572
Number of successful extensions: 41
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 2
Length of query: 165
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 87
Effective length of database: 1,250,540
Effective search space: 108796980
Effective search space used: 108796980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)