BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0018.p
         (316 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310707|ref|YP_003774799.1| esterase of the alpha-beta hydr...   629   0.0  
gi|300311534|ref|YP_003775626.1| lipoprotein transmembrane prote...   143   1e-35

>gi|300310707|ref|YP_003774799.1| esterase of the alpha-beta
           hydrolase superfamily protein [Herbaspirillum
           seropedicae SmR1]
          Length = 316

 Score =  629 bits (1623), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/316 (99%), Positives = 315/316 (99%)

Query: 1   MRFPFRLAAAALASTFFLSACGTSSWMPGSSSPREGGTATSSTVTPVSPTPRRVKIGLAL 60
           MRFPFRLAAAALASTFFLSACGTSSWMPGSSSPREGGTATSSTVTPVSPTPRR+KIGLAL
Sbjct: 1   MRFPFRLAAAALASTFFLSACGTSSWMPGSSSPREGGTATSSTVTPVSPTPRRLKIGLAL 60

Query: 61  GGGAARGFAHIGVIKALEAQGVQVDVVAGTSAGSLVGALYAAGNDGFALQKLALAMDEAA 120
           GGGAARGFAHIGVIKALEAQGVQVDVV GTSAGSLVGALYAAGNDGFALQKLALAMDEAA
Sbjct: 61  GGGAARGFAHIGVIKALEAQGVQVDVVTGTSAGSLVGALYAAGNDGFALQKLALAMDEAA 120

Query: 121 ISDWSVPLFSKVSGVLKGEGVQNYVNKALNNVPIEKFKIPFGAVATDLRSGQPILFQRGN 180
           ISDWSVPLFSKVSGVLKGEGVQNYVNKALNNVPIEKFKIPFGAVATDLRSGQPILFQRGN
Sbjct: 121 ISDWSVPLFSKVSGVLKGEGVQNYVNKALNNVPIEKFKIPFGAVATDLRSGQPILFQRGN 180

Query: 181 AGIAVRASSAVPGVFQSVKIGDHTYVDGGLVSPVPVRFARQMGADFVIAVNISANPEAQA 240
           AGIAVRASSAVPGVFQSVKIGDHTYVDGGLVSPVPVRFARQMGADFVIAVNISANPEAQA
Sbjct: 181 AGIAVRASSAVPGVFQSVKIGDHTYVDGGLVSPVPVRFARQMGADFVIAVNISANPEAQA 240

Query: 241 ASSSSVDVLLQTFAIMGQTINQYELKNADIVLQPGLGAMKGSDFASRNVAIMAGEQAALA 300
           ASSSSVDVLLQTFAIMGQTINQYELKNADIVLQPGLGAMKGSDFASRNVAIMAGEQAALA
Sbjct: 241 ASSSSVDVLLQTFAIMGQTINQYELKNADIVLQPGLGAMKGSDFASRNVAIMAGEQAALA 300

Query: 301 AMPEIKRKLKAMQMGE 316
           AMPEIKRKLKAMQMGE
Sbjct: 301 AMPEIKRKLKAMQMGE 316


>gi|300311534|ref|YP_003775626.1| lipoprotein transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 758

 Score =  143 bits (361), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/286 (34%), Positives = 149/286 (52%), Gaps = 34/286 (11%)

Query: 46  PVSPTPRRVKIGLALGGGAARGFAHIGVIKALEAQGVQVDVVAGTSAGSLVGALYAAGND 105
           P +  PR  ++ L L GG ARG+AH+GV++ LE   + +D +AGTS G+L+G LYA+G D
Sbjct: 35  PAATQPR-PRVCLVLSGGGARGYAHLGVLQYLEQLHIPIDCIAGTSMGALIGGLYASGLD 93

Query: 106 GFALQKLALAMDEAAIS----------------DWSVPL----------FSKVSGVLKGE 139
              L++   A + + I+                ++  P+              SG+++G 
Sbjct: 94  AGELERRLAATNLSDIAFDRNERSRLPQAQREDEFQYPISISAGLDGSKLKLASGLVQGN 153

Query: 140 GV----QNYVNKALNNVPIEKFKIPFGAVATDLRSGQPILFQRGNAGIAVRASSAVPGVF 195
            +    QN+  +   N+   +  IPF AVATDL  G  ++   G+   A+RAS AVPG+F
Sbjct: 154 KLLALLQNWTAQLPANIDFARLPIPFRAVATDLSLGSEVVLDHGSLPRAMRASMAVPGLF 213

Query: 196 QSVKIGDHTYVDGGLVSPVPVRFARQMGADFVIAVNISANPEAQAASSSSVDVLLQTFAI 255
              +I   T VDGGLVS +PV+ AR MGAD VIAVNI+   +  A   S   V  Q   I
Sbjct: 214 APFRIDQRTLVDGGLVSNLPVQTARDMGADVVIAVNIATPLQDAAQLQSPTAVAQQMVGI 273

Query: 256 MGQTINQYE---LKNADIVLQPGLGAMKGSDFASRNVAIMAGEQAA 298
           + Q   + +   L   DI+++P +  M  +DFA     + AG +AA
Sbjct: 274 LIQQNVKAQKALLGAQDILIEPQMEGMSFTDFARGKDGVNAGWEAA 319


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 851,265
Number of extensions: 32871
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 2
Length of query: 316
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 231
Effective length of database: 1,217,395
Effective search space: 281218245
Effective search space used: 281218245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)